View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20143_low_11 (Length: 224)
Name: NF20143_low_11
Description: NF20143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20143_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 45344338 - 45344158
Alignment:
| Q |
25 |
gctaccggagcaaatacttcgttataatcaatcctttgttgctgagcataacctttagctactaacctggctttgaacttatcaacctcgccgttctcat |
124 |
Q |
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| T |
45344338 |
gctaccggagcaaagacttcgttataatcaaccctt-gttgctgagcatagcctttagctaccaaccgggctttgaacttatcaacctcgccattctcat |
45344240 |
T |
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| Q |
125 |
ttaatttggttctaaagacccatttcacaccaatcttcttagcaccttcaggtaaagttgtaagctgccatgttttattctt |
206 |
Q |
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| T |
45344239 |
ttaatttggttctaaagacccatttcacaccaatcttcttagcaccttcaggtaaatttgtaagctgccaagttttattctt |
45344158 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 3013322 - 3013390
Alignment:
| Q |
66 |
ctgagcataacctttagctactaacctggctttgaacttatcaacctcgccgttctcatttaatttggt |
134 |
Q |
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||||||||| || ||||||||||| || |||||| | || |||||||| || |||||||| |||||||| |
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| T |
3013322 |
ctgagcatatcccttagctactaatctagctttgtatttctcaacctctcctttctcattcaatttggt |
3013390 |
T |
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