View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20143_low_2 (Length: 688)

Name: NF20143_low_2
Description: NF20143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20143_low_2
NF20143_low_2
[»] chr7 (5 HSPs)
chr7 (7-529)||(44672264-44672786)
chr7 (525-670)||(44673948-44674093)
chr7 (435-670)||(26401699-26401934)
chr7 (528-640)||(8863992-8864104)
chr7 (617-670)||(48768381-48768434)
[»] chr8 (3 HSPs)
chr8 (435-670)||(9529544-9529779)
chr8 (534-670)||(36307782-36307918)
chr8 (537-638)||(13813385-13813486)
[»] chr3 (4 HSPs)
chr3 (537-670)||(44493397-44493530)
chr3 (579-658)||(4485684-4485763)
chr3 (580-641)||(19822718-19822779)
chr3 (531-670)||(54563295-54563434)
[»] chr1 (1 HSPs)
chr1 (531-670)||(38490647-38490786)
[»] chr4 (2 HSPs)
chr4 (494-670)||(12353379-12353555)
chr4 (507-637)||(28858987-28859117)
[»] chr6 (2 HSPs)
chr6 (585-670)||(18689563-18689648)
chr6 (582-671)||(11605903-11605992)
[»] chr5 (1 HSPs)
chr5 (585-671)||(19233903-19233989)
[»] chr2 (1 HSPs)
chr2 (617-670)||(11551699-11551752)


Alignment Details
Target: chr7 (Bit Score: 503; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 7 - 529
Target Start/End: Original strand, 44672264 - 44672786
Alignment:
Q  7 gagagagatgaataaaaggttataatcaccccctgctttggcaggggatattgaactgtggggatttgtgatagaaaatacatgaagaaaacaagtttat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44672264 gagagagatgaataaaaggttataatcaccccctgctttggcaggggatattgaactgtggggatttgtgatagaaaatacatgaagaaaacaagtttat 44672363  T
Q  107 atactataattgtacataaactttgagagaaccagctcagcattatattgatttaaggtgttggtttctgtggttgttgaatcttatatttagagaattt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44672364 atactataattgtacataaactttgagagaaccagctcagcattatattgatttaaggtgttggtttctgtggttgttgaatcttatatttagagaattt 44672463  T
Q  207 gttgtttttattttaatcaattgtatgcaagaggcaaatggcacgtaaacatgtttgaattaccaaaataggtcgtcattgttataggcagtccataaaa 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44672464 gttgtttttattttaatcaattgtatgcaagaggcaaatggcacggaaacatgtttgaattaccaaaataggtcgtcattgttataggcagtccataaaa 44672563  T
Q  307 tgaaattcaatttaacgtaggaggtacaagattcattgtaacacaaggaacaatgaaaaaacaagtgaaactgaaatagtaaagtaaaggtgtaaagaac 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44672564 tgaaattcaatttaacgtaggaggtacaagattcattgtaacacaaggaacaatgaaaaaacaagtgaaactgaaatagtaaagtaaaggtgtaaagaac 44672663  T
Q  407 aaatatagaatgtgtggggcgagctaacagtttaccgaagtccgagattttttacagtaggaacgtttcagatgagttgaaaaacagtattactaatata 506  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44672664 aaatatagaatgtgcggggcgagctaacagtttaccgaagttcgagattttttacagtaggaacgtttcagatgagttgaaaaacagtattgctaatata 44672763  T
Q  507 ttgggggttcgtgcagtgttagg 529  Q
    ||||| |||||||||||||||||    
T  44672764 ttgggcgttcgtgcagtgttagg 44672786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 525 - 670
Target Start/End: Original strand, 44673948 - 44674093
Alignment:
Q  525 ttaggcaccggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaatt 624  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44673948 ttaggcaccggaaagtatttaggtatgccgtctatgattaggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagattaaatt 44674047  T
Q  625 cttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgat 670  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||    
T  44674048 cttggagcagcaagtgtttgtccaaggtagggcgcaaagttatgat 44674093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 435 - 670
Target Start/End: Original strand, 26401699 - 26401934
Alignment:
Q  435 agtttaccgaagtccgagattttttacagtaggaacgtttcagatgagttgaaaaacagtattactaatatattgggggttcgtgcagtgttaggcaccg 534  Q
    |||||||||||||| || ||||| ||||||||||| ||  |||||| |||||||||||||||||| || || || | ||| ||||| || ||||| ||||    
T  26401699 agtttaccgaagtcagaaattttctacagtaggaatgtgccagatgcgttgaaaaacagtattacaaacattttagcggtccgtgctgttttaggtaccg 26401798  T
Q  535 gaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcag 634  Q
    | ||||||||||| ||||| ||||||||||||| | |  ||| |  ||| ||| |||||||||| || ||||| ||||||||||| || || ||||| ||    
T  26401799 gtaagtatttaggaatgccatctatgattgggatggatagaatagacacattttcttacattaaggaccgggtttggcaaagaattaactcatggagtag 26401898  T
Q  635 caagtgtttgtccaaggcagggcgcgaagttatgat 670  Q
    ||||||||||||||| ||||||||||| ||||||||    
T  26401899 caagtgtttgtccaaagcagggcgcgaggttatgat 26401934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 528 - 640
Target Start/End: Complemental strand, 8864104 - 8863992
Alignment:
Q  528 ggcaccggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattctt 627  Q
    ||||| || |||||| |||||||||| || ||||| ||  ||||  | || ||||||||| |||| ||||| || || ||||||||||| ||||||||||    
T  8864104 ggcactggtaagtatctaggtatgccttccatgataggacggaataggacgaccaccttttcttatattaaggaccgtgtgtggcaaaggataaattctt 8864005  T
Q  628 ggagcagcaagtg 640  Q
    |||| ||||||||    
T  8864004 ggagtagcaagtg 8863992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 617 - 670
Target Start/End: Original strand, 48768381 - 48768434
Alignment:
Q  617 aataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgat 670  Q
    ||||||||||||||| || || ||||| || |||||||||||||| ||||||||    
T  48768381 aataaattcttggagtagtaattgtttatctaaggcagggcgcgaggttatgat 48768434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 435 - 670
Target Start/End: Original strand, 9529544 - 9529779
Alignment:
Q  435 agtttaccgaagtccgagattttttacagtaggaacgtttcagatgagttgaaaaacagtattactaatatattgggggttcgtgcagtgttaggcaccg 534  Q
    |||||||||||||  || ||||| ||||||||||| ||  ||||||  |||||||||| |||||| || || || | ||||||||| || ||||| ||||    
T  9529544 agtttaccgaagttagaaattttctacagtaggaatgtgccagatgcattgaaaaacaatattacaaacattttagcggttcgtgctgttttaggtaccg 9529643  T
Q  535 gaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcag 634  Q
    | ||||||||||  ||||| ||||||||| ||||| |  |||||||||| |||||||||||||| ||||| || ||||||||||| || || ||||| ||    
T  9529644 gcaagtatttagaaatgccatctatgattaggagggatagaacaaccacatttgcttacattaaggatcgagtttggcaaagaattaactcatggagtag 9529743  T
Q  635 caagtgtttgtccaaggcagggcgcgaagttatgat 670  Q
    ||||||||||||||||||| ||  ||| ||||||||    
T  9529744 caagtgtttgtccaaggcaaggtacgaggttatgat 9529779  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 534 - 670
Target Start/End: Complemental strand, 36307918 - 36307782
Alignment:
Q  534 ggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagca 633  Q
    ||||||||||||||||||||||| ||||||||  | ||  ||||| |||| |||||||| ||||| ||||| ||||||||||| || ||||||||||| |    
T  36307918 ggaaagtatttaggtatgccgtccatgattggtcgtaatagaacatccacttttgcttatattaaggatcgtgtgtggcaaaggattaattcttggagta 36307819  T
Q  634 gcaagtgtttgtccaaggcagggcgcgaagttatgat 670  Q
    | |||||| | || || ||||| || |||||||||||    
T  36307818 gtaagtgtctctctaaagcaggtcgggaagttatgat 36307782  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 537 - 638
Target Start/End: Complemental strand, 13813486 - 13813385
Alignment:
Q  537 aagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagca 636  Q
    ||||||||||||||||| || ||||||||  || |  | ||  |||| |||||||| || || || || |||||||||||||||||||||||||||||||    
T  13813486 aagtatttaggtatgccttccatgattggacgggataggacggccacttttgcttatatcaaggaccgtgtgtggcaaagaataaattcttggagcagca 13813387  T
Q  637 ag 638  Q
    ||    
T  13813386 ag 13813385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 537 - 670
Target Start/End: Original strand, 44493397 - 44493530
Alignment:
Q  537 aagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagca 636  Q
    ||||||||||| ||||||||||||||||| ||  |  |||||||||| |||||||| |||| ||| ||||||||||||   || ||||| ||||| ||||    
T  44493397 aagtatttaggcatgccgtctatgattggcagagatagaacaaccacatttgcttatattatagaccgggtgtggcaacatattaattcgtggagtagca 44493496  T
Q  637 agtgtttgtccaaggcagggcgcgaagttatgat 670  Q
    ||||  | || ||||||||||| |||||||||||    
T  44493497 agtgcctttctaaggcagggcgtgaagttatgat 44493530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 579 - 658
Target Start/End: Complemental strand, 4485763 - 4485684
Alignment:
Q  579 accacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcg 658  Q
    |||||||||||||| ||||| || || ||||||||||| |||||||||||||| ||||||||  | || |||||||||||    
T  4485763 accacctttgcttatattaaggaccgtgtgtggcaaaggataaattcttggagtagcaagtgcctctcaaaggcagggcg 4485684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 580 - 641
Target Start/End: Complemental strand, 19822779 - 19822718
Alignment:
Q  580 ccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgt 641  Q
    |||| ||||| ||||| |||||||| |||||||||| ||| |||||||||||||||||||||    
T  19822779 ccacttttgcctacatcaaagatcgtgtgtggcaaaaaattaattcttggagcagcaagtgt 19822718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 531 - 670
Target Start/End: Complemental strand, 54563434 - 54563295
Alignment:
Q  531 accggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttgga 630  Q
    ||||| ||||||||||| ||| ||||||||||||| ||  |  | |||||||| || || || ||||| || || ||||||||| | || ||||||||||    
T  54563434 accggtaagtatttaggaatgtcgtctatgattggaagagataggacaaccactttcgcctatattaaggaccgtgtgtggcaacgcattaattcttgga 54563335  T
Q  631 gcagcaagtgtttgtccaaggcagggcgcgaagttatgat 670  Q
    | || |||||  | || ||||||||||| |||||||||||    
T  54563334 gtagtaagtgcctctctaaggcagggcgtgaagttatgat 54563295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 531 - 670
Target Start/End: Complemental strand, 38490786 - 38490647
Alignment:
Q  531 accggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttgga 630  Q
    |||||||||||||||||||||||||| ||||| ||  |  |  |||||||||| |||||||| ||||| ||||| ||||||||||  || ||||||||||    
T  38490786 accggaaagtatttaggtatgccgtccatgatcggtcgtgatagaacaaccacttttgcttatattaaggatcgtgtgtggcaaatgattaattcttgga 38490687  T
Q  631 gcagcaagtgtttgtccaaggcagggcgcgaagttatgat 670  Q
    | || |||||| | || || ||||| || |||||||||||    
T  38490686 gtagtaagtgtctctctaaagcaggtcgggaagttatgat 38490647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 494 - 670
Target Start/End: Original strand, 12353379 - 12353555
Alignment:
Q  494 tattactaatatattgggggttcgtgcagtgttaggcaccggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttac 593  Q
    ||||||| |||| ||||| || ||||| ||  | || |||||||||||| ||||  |||| || |||||||| ||| |||||||  | || ||||| |||    
T  12353379 tattactcatattttgggtgtacgtgcggtccttgggaccggaaagtatctaggcttgccttcaatgattggtagggaccgaactgcaacgtttgcatac 12353478  T
Q  594 attaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgat 670  Q
    ||||||||  |||||||||||| ||| ||||| ||||| || || |||||||| ||||||| |||||| || |||||    
T  12353479 attaaagacagggtgtggcaaaaaatcaattcgtggagtagtaaatgtttgtcgaaggcagagcgcgaggtcatgat 12353555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 637
Target Start/End: Original strand, 28858987 - 28859117
Alignment:
Q  507 ttgggggttcgtgcagtgttaggcaccggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcggg 606  Q
    ||||| |||||||||||  | || || || ||||| |||||| |||| |||||||| || ||| |  |||||||||| ||||| || ||||||||||  |    
T  28858987 ttgggtgttcgtgcagttcttggaacaggtaagtacttaggtttgccatctatgatcggaagggatagaacaaccacgtttgcatatattaaagatcatg 28859086  T
Q  607 tgtggcaaagaataaattcttggagcagcaa 637  Q
    | ||||||| ||| ||||||||||| |||||    
T  28859087 tttggcaaaaaatcaattcttggagtagcaa 28859117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 585 - 670
Target Start/End: Original strand, 18689563 - 18689648
Alignment:
Q  585 tttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgat 670  Q
    |||||| ||||||||||  |||||||||||| ||| ||||| || || ||||| |||||||| |||||||||||||| || |||||    
T  18689563 tttgctaacattaaagacagggtgtggcaaaaaattaattcgtgaagtagcaaatgtttgtcgaaggcagggcgcgaggtcatgat 18689648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 582 - 671
Target Start/End: Complemental strand, 11605992 - 11605903
Alignment:
Q  582 acctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatt 671  Q
    |||||||||||||| || ||| | |||||||| | ||| ||||||||||| || |||||| | ||||| |||||||| ||||| ||||||    
T  11605992 acctttgcttacatcaaggatagagtgtggcataaaatcaattcttggagtagtaagtgtctttccaaagcagggcgtgaagtcatgatt 11605903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 585 - 671
Target Start/End: Original strand, 19233903 - 19233989
Alignment:
Q  585 tttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatt 671  Q
    |||||||| ||||||||||| || ||||| | |||||||| |||||| || |||||||| || || |||||||| || |||||||||    
T  19233903 tttgcttatattaaagatcgagtttggcagaaaataaattattggagtagtaagtgtttatctaaagcagggcgtgaggttatgatt 19233989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 617 - 670
Target Start/End: Original strand, 11551699 - 11551752
Alignment:
Q  617 aataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgat 670  Q
    ||||||||||||||| || || ||||| || |||||||||||||||||||||||    
T  11551699 aataaattcttggagtagtaaatgtttatctaaggcagggcgcgaagttatgat 11551752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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