View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20143_low_4 (Length: 504)
Name: NF20143_low_4
Description: NF20143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20143_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 129 - 498
Target Start/End: Complemental strand, 26358305 - 26357940
Alignment:
| Q |
129 |
atcacaaattgttgatttcttgtgtgtttatgattatcctattagtgcccagctcttgctgttgagagaaagatgttgtttgaacctgttaaggttaatc |
228 |
Q |
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| T |
26358305 |
atcacaaattgttgatttcttgtgtgtttgtgattatcctattagcgcccggctcttgctgttgaga--aagatgttgtttgaacctgttaaggttaatc |
26358208 |
T |
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| Q |
229 |
aatttttgaatggtaaattagtaataatgaacattaaaattgaatctgttaattttaatcacaaggcactcgaaaaacaaaaataaggggaattggctgc |
328 |
Q |
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| T |
26358207 |
aatttttgaatggtaaattagtaatgatgaacattaaaattgaatctgttaattttaatcacaaggcacttgaaaaacaaaaataaggggaattggctgc |
26358108 |
T |
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| Q |
329 |
gagtttatgtgttgtcaaaaatcattattgtcatcaacgttgatttctgttctgatcaaattccgatagcgacaccagagtctagagtagctgaatttgg |
428 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
26358107 |
gagtttatgtgttgtccaaaatcattattgtcatcaatgttgattcctgttctgatcaaattccgatagcgaca-cagagtctagagtagctgaattagg |
26358009 |
T |
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| Q |
429 |
tgattaagcttatatttgaaccctattaaacatgaaattgaaactatatttcagttatgttagaacctat |
498 |
Q |
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| T |
26358008 |
tgattaagc-tatatttgaaccctattaaacatgaaattgaaactatatttcagttatgttagaacctat |
26357940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 26358467 - 26358374
Alignment:
| Q |
18 |
agtactgtatcacttttctaactcttgccaatatataattgttcctttcgtctttgttaatttattgaattttaaatctctgattcaatactcc |
111 |
Q |
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| T |
26358467 |
agtactgtatcacttttctaactcttgccaatatataattgttcctttcgtctttgttaatttattgaattttaaatctctgattcagtactcc |
26358374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 30012324 - 30012366
Alignment:
| Q |
18 |
agtactgtatcacttttctaactcttgccaatatataattgtt |
60 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
30012324 |
agtattgtatcacttttctaactcttggcaatatataattgtt |
30012366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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