View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20143_low_5 (Length: 407)
Name: NF20143_low_5
Description: NF20143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20143_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 14 - 392
Target Start/End: Complemental strand, 37841531 - 37841153
Alignment:
| Q |
14 |
tgaaggaatagttacagaaaacatattcccgtgtagatacaacctcaataattgagtcaagtttccaatatttgttgggatagggccactgagaaggtta |
113 |
Q |
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|||||||||||| | ||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37841531 |
tgaaggaatagtccctgaaaacatattacgatgtagatacaacctcaatagatgagtcaagtttccaatatttgttgggatagggccactgagaaggtta |
37841432 |
T |
|
| Q |
114 |
ctgtgtaggctcacttcttcgagggattgaatttcaaacaatgaatctggaatttcaccagtcagcagattggaagacagtcctataaactttaaatttt |
213 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37841431 |
ctgtgtaggctcacttcttcgagggaatgaatttcaaacaatgaatctggaatttcaccagtcagcagattggaagacagtcctataacctttaaatttt |
37841332 |
T |
|
| Q |
214 |
gcaactttttcaaactatatggtatctttccactgaatctattcttagaaaggtctaaatactcgagcaaactacaattgcttaactctgaagggacatt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37841331 |
gcaactttttcaaactatatggtatctttccactgaatctattcttagaaaggtctaaatactcaagcaaactacaattgcttaactctgaagggacatt |
37841232 |
T |
|
| Q |
314 |
tcctgtaaaaccattacccaacaatacaaggttctgcaagtgataaaagtttccaatttctggtccaagttgaccaaga |
392 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37841231 |
tcctgtgaaaccattacccaacaatacaaggttctgcaagtgataaaagtttccaatttctggtccaagttgaccaaga |
37841153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 390
Target Start/End: Complemental strand, 37830212 - 37829832
Alignment:
| Q |
10 |
gagatgaaggaatagttacagaaaacatattcccgtgtagatacaacctcaataattgagtcaagtttccaatatttgttgggatagggccactgagaag |
109 |
Q |
| |
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||||||||||||| || | ||||||||||| | |||||||||||||| |||| | ||||| |||||||||||| ||||||||| ||| || ||||| |
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| T |
37830212 |
gagatgaaggaatggtccctgaaaacatattactatgtagatacaaccttaatagattagtcatgtttccaatattggttgggatattgccgctaagaag |
37830113 |
T |
|
| Q |
110 |
gttactgtgtaggctcacttcttcgagggattgaatttcaaacaatgaatctggaatttcaccagtcagcagattggaagacagtcctataaactttaaa |
209 |
Q |
| |
|
|||| |||| |||||||||||||| ||||||||||||||||| || ||||||||||||| ||||||||| ||||||||||||| || || |||||||||| |
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| T |
37830112 |
gttattgtgcaggctcacttcttcaagggattgaatttcaaataaagaatctggaattttaccagtcagaagattggaagacaatcttaaaaactttaaa |
37830013 |
T |
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| Q |
210 |
ttttgcaactttttcaaactatatggtatctttccactgaatctattcttagaaaggtctaaatactcgagcaaactacaattgcttaactctgaaggga |
309 |
Q |
| |
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|||||||||||| |||||||||||| ||| ||||||||||||| |||| |||||| ||||||| || ||||| ||||| ||||||||||||||||| | |
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| T |
37830012 |
ttttgcaactttatcaaactatatgatatacttccactgaatctgttctcagaaagatctaaattctgaagcaagctacagttgcttaactctgaaggca |
37829913 |
T |
|
| Q |
310 |
catttcctgtaaaaccattacccaacaatacaaggttctgcaagtgataaaagtttccaatttctggtccaagttgaccaa |
390 |
Q |
| |
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| ||||||| ||||||||||| ||||| | |||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
37829912 |
cgtttcctgagaaaccattaccgaacaacaaaaggttctgcaagtgataaaggttaccaatttctggtccaagttgaccaa |
37829832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 10 - 390
Target Start/End: Complemental strand, 37835916 - 37835536
Alignment:
| Q |
10 |
gagatgaaggaatagttacagaaaacatattcccgtgtagatacaacctcaataattgagtcaagtttccaatatttgttgggatagggccactgagaag |
109 |
Q |
| |
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|||||||||||||||| | || ||| ||| || | ||||||||||||||||| |||||||||||||||||||| || |||||||| ||||| ||||| |
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| T |
37835916 |
gagatgaaggaatagtccctgacaactgattaccatatagatacaacctcaatagatgagtcaagtttccaatattggtcgggataggaccactaagaag |
37835817 |
T |
|
| Q |
110 |
gttactgtgtaggctcacttcttcgagggattgaatttcaaacaatgaatctggaatttcaccagtcagcagattggaagacagtcctataaactttaaa |
209 |
Q |
| |
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||||||||| ||| | |||||||| | |||| |||||| |||||| ||||||||||||||||| | ||||||||||| || || | |||||| |||| |
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| T |
37835816 |
gttactgtgcaggtttacttcttccaaggatggaattttaaacaaggaatctggaatttcaccgataagcagattggatgagagactcataaaccgtaaa |
37835717 |
T |
|
| Q |
210 |
ttttgcaactttttcaaactatatggtatctttccactgaatctattcttagaaaggtctaaatactcgagcaaactacaattgcttaactctgaaggga |
309 |
Q |
| |
|
||| ||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| | |
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| T |
37835716 |
agttgtaacttattcaaactagatggtatctttccactgaatctattctcagaaaggtctaaatactcaagcaaactacagttgcttaactctgaaggca |
37835617 |
T |
|
| Q |
310 |
catttcctgtaaaaccattacccaacaatacaaggttctgcaagtgataaaagtttccaatttctggtccaagttgaccaa |
390 |
Q |
| |
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| ||||||| |||||||| || |||||||||||| |||||||||||| || ||| |||||||| ||||||||||||| |
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| T |
37835616 |
cttttcctgagaaaccatttccaaacaatacaagggtctgcaagtgatgaaggttcaaaatttctgtcccaagttgaccaa |
37835536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 47 - 382
Target Start/End: Complemental strand, 37849254 - 37848919
Alignment:
| Q |
47 |
tagatacaacctcaataattgagtcaagtttccaatatttgttgggatagggccactgagaaggttactgtgtaggctcacttcttcgagggattgaatt |
146 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||| |||||||| |||||||||||| |
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|
| T |
37849254 |
tagatacaacctcaatagacgagtcaagtttccaatatttgttgggataggaccactaagtaggttactgtgcaggctaacttcttcaagggattgaatt |
37849155 |
T |
|
| Q |
147 |
tcaaacaatgaatctggaatttcaccagtcagcagattggaagacagtcctataaactttaaattttgcaactttttcaaactatatggtatctttccac |
246 |
Q |
| |
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| |||||| |||||||||||||||||||||| || |||||||| || | | ||||||| ||| || ||||| ||||||||| |||||||||||||||||| |
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| T |
37849154 |
tgaaacaaagaatctggaatttcaccagtcaacatattggaagccaatgccataaactgtaacttctgcaaatttttcaaagtatatggtatctttccac |
37849055 |
T |
|
| Q |
247 |
tgaatctattcttagaaaggtctaaatactcgagcaaactacaattgcttaactctgaagggacatttcctgtaaaaccattacccaacaatacaaggtt |
346 |
Q |
| |
|
||||||| |||| |||||| ||||||| || ||||||||||| || |||||||||||||| || ||||| | ||| ||||||| ||||| | |||||| |
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| T |
37849054 |
tgaatctgttctcagaaagctctaaattctgaagcaaactacagttacttaactctgaaggtacttttccggagaaagcattaccaaacaacaaaaggtt |
37848955 |
T |
|
| Q |
347 |
ctgcaagtgataaaagtttccaatttctggtccaag |
382 |
Q |
| |
|
||| || ||||||| ||||| |||||||||||||| |
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| T |
37848954 |
ctgtaaatgataaagatttcctatttctggtccaag |
37848919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 385
Target Start/End: Complemental strand, 37506707 - 37506674
Alignment:
| Q |
352 |
agtgataaaagtttccaatttctggtccaagttg |
385 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
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|
| T |
37506707 |
agtgataaaggtttccaatttctggtccaagttg |
37506674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 9e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 10 - 390
Target Start/End: Complemental strand, 36864680 - 36864297
Alignment:
| Q |
10 |
gagatgaaggaatagttacagaaaacatattcccgtgtagatacaac---ctcaataattgagtcaagtttccaatatttgttgggatagggccactgag |
106 |
Q |
| |
|
|||||||||||||||| | ||||||||||| || | |||||| || ||||||| |||||||||||||||||||| ||||| ||| ||||| || |
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|
| T |
36864680 |
gagatgaaggaatagtccctgaaaacatattaccatatagataatacagtctcaatagatgagtcaagtttccaatattggttggaatatttccactaag |
36864581 |
T |
|
| Q |
107 |
aaggttactgtgtaggctcacttcttcgagggattgaatttcaaacaatgaatctggaatttcaccagtcagcagattggaagacagtcctataaacttt |
206 |
Q |
| |
|
||||||| |||| |||||||||||||| ||||| |||||||||| || |||||||||||||||||||||| || ||||||||||| || ||| ||||| |
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|
| T |
36864580 |
aaggttattgtgcaggctcacttcttcaagggaaggaatttcaaataaagaatctggaatttcaccagtcaacaaattggaagacaatctcatagacttt |
36864481 |
T |
|
| Q |
207 |
aaattttgcaactttttcaaactatatggtatctttccactgaatctattcttagaaaggtctaaatactcgagcaaactacaattgcttaactctgaag |
306 |
Q |
| |
|
|||||| | | |||||||||||| |||||||||||| | |||||||||| |||||||||||| | ||| ||||||||||| |||||||||||||||| |
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|
| T |
36864480 |
aaatttcttagccttttcaaactatgcggtatctttccattaaatctattctcagaaaggtctaacttctctagcaaactacagttgcttaactctgaag |
36864381 |
T |
|
| Q |
307 |
ggacatttcctgtaaaaccattacccaacaatacaaggttctgcaagtgataaaagtttccaatttctggtccaagttgaccaa |
390 |
Q |
| |
|
| || ||||||| ||| |||||| ||||| | ||| |||| ||| ||||||| ||||||||||||||||||||||||||||| |
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|
| T |
36864380 |
gcacctttcctgagaaattattaccaaacaacaaaagattctccaaatgataaaggtttccaatttctggtccaagttgaccaa |
36864297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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