View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20143_low_8 (Length: 278)
Name: NF20143_low_8
Description: NF20143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20143_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 29104848 - 29105102
Alignment:
| Q |
8 |
agagaagaattcagcgtctaagcaagcctggttcatggttaatatctggtaaaactctttttggagcctcttcatagcgatttgcattaggttttgtgca |
107 |
Q |
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| T |
29104848 |
agagaaggattcagcgtctaagcaggcctggttcatggttaatatctggtaaaactctttttggagcctcttcatagcgatttgcattaggttttgagca |
29104947 |
T |
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| Q |
108 |
tggatgagtttcggagacgatggttcgagctcgagtaacgagtgcatggctctttgaagttggtgaacgtggtgaatatactgaatggcttcgtttctgt |
207 |
Q |
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| T |
29104948 |
tggatgagtttcggagacgatggttcgagctcgagtaacgagtgcatggctctttgaagttggttaacgtggtgaatatactgaatggcttcgtttctgt |
29105047 |
T |
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| Q |
208 |
cgttgtagaagatggaagttactttggcataatccgaggtttcggagttccattt |
262 |
Q |
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| T |
29105048 |
cgttgtagaagatggaagttactttggcataatccgaggtttcggagttccattt |
29105102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 9 - 262
Target Start/End: Original strand, 29090588 - 29090841
Alignment:
| Q |
9 |
gagaagaattcagcgtctaagcaagcctggttcatggttaatatctggtaaaactctttttggagcctcttcatagcgatttgcattaggttttgtgcat |
108 |
Q |
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| T |
29090588 |
gagaaggattcagagtctaagtatgcctggttcatggttaagatctggtagaattctttttggagcctcttcatagcaatttgcattaggttttgtgcgt |
29090687 |
T |
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| Q |
109 |
ggatgagtttcggagacgatggttcgagctcgagtaacgagtgcatggctctttgaagttggtgaacgtggtgaatatactgaatggcttcgtttctgtc |
208 |
Q |
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| T |
29090688 |
ggatgagttctggagacgatggttcgagctcgagtaacgagtgcatggctctttgaagttggttaacgtggtgaatgtactgaatggcttcacatttgtt |
29090787 |
T |
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| Q |
209 |
gttgtagaagatggaagttactttggcataatccgaggtttcggagttccattt |
262 |
Q |
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| T |
29090788 |
gttgtagaagagggaagttattttggcataatccgaggtttcggagttccattt |
29090841 |
T |
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