View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20144_high_3 (Length: 393)
Name: NF20144_high_3
Description: NF20144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20144_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 7 - 377
Target Start/End: Original strand, 43475730 - 43476099
Alignment:
| Q |
7 |
ggagcagagaatggagatgacctttgttctcatgggagagggatcaatttcttgagctagaggtttttattgtagagtgcagatttttcgaacaaatggg |
106 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43475730 |
ggagctgagaatggagatggcctttgttctcatggg-gagggatcaatttcttgagctagaggtttttattgtagagtgcagatttttcggacaaatggg |
43475828 |
T |
|
| Q |
107 |
tttggactttggagacacgattctatggttgggtacacggtaaagtctgcatatatactgttgcagagatactgtgagcataattctgtttctgcagaat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43475829 |
tttggactttggagacacgattctatggttgggtacacggtaaagtctgcatatatactgttgcagagatactgtgagcataattctgtttctgcagaat |
43475928 |
T |
|
| Q |
207 |
tgttgagagctttcaaagtttttgtggagcgatttggttccattgaaattcacggtttttagatggaagagtattgcaggacagaatcatgacgaagggt |
306 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
43475929 |
tgttgagggctttcaaagtttctgtggagcggtttggttccattgaaattcacggtttttagatggaagagtattgcaggacataatcatgacgatgggt |
43476028 |
T |
|
| Q |
307 |
gctctgaaagcaaggggtgtcttagcagataatgccgataatccctgcgtgttctgctatgctgcagaaga |
377 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43476029 |
gctctgaaagcaaggggtgtctaagcatataatgtcgataatccctgcgtgttctgctatgctgcagaaga |
43476099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 377
Target Start/End: Complemental strand, 43564568 - 43564194
Alignment:
| Q |
7 |
ggagcagagaatggagatgacctttgttctcatgggagagggatcaatttcttgagctagaggtttttattgtag-----------agtgcagatttttc |
95 |
Q |
| |
|
||||| |||| | |||||| |||||||| || ||||||||||||||||| ||||| ||||||| | |||||| || |||||||||||||| |
|
|
| T |
43564568 |
ggagctgagactagagatggcctttgttatcgtgggagagggatcaattgcttgaactagaggctgttattgcagggatcactgtgagtgcagatttttc |
43564469 |
T |
|
| Q |
96 |
gaacaaatgggtttggactttggagacacgattctatggttgggtacacggtaaagtctgcatatatactgttgcagagatactgtgagcataattctgt |
195 |
Q |
| |
|
| |||||||||||| || |||| || || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43564468 |
ggacaaatgggtttaga-------gacatgactccgtggctgggtacacggtaaagtctgcatatatactgttgcagagatactgtgagcataattctgt |
43564376 |
T |
|
| Q |
196 |
ttctgcagaattgttgagagctttcaaagtttttgtggagcgatttggttccattgaaattcacggtttttagatggaagagtattgcaggacagaatca |
295 |
Q |
| |
|
||||||||||||||| || |||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43564375 |
ttctgcagaattgttaagggctttcaaggtttttgtggagcagtttggttccatttaaattcacggtttttagatggaagagtattgcaggacagaatca |
43564276 |
T |
|
| Q |
296 |
tgacgaagggtgctctgaaagcaaggggtgtcttagcagataatgccgataatccctgcgtgttctgctatgctgcagaaga |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43564275 |
tgacgaagggtgctctgaaagcaaggggtgtcttagcagataatgccgataatccctgcgtgttctgctatgctgcagaaga |
43564194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University