View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20144_high_4 (Length: 359)
Name: NF20144_high_4
Description: NF20144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20144_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 43665938 - 43666215
Alignment:
| Q |
11 |
gatgaaaggacgacggcgaccgaagcgtgaagtgcaacgatcgctgtgataaccgacaataggttggacaagcatccccgagattgggccgcagagccat |
110 |
Q |
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| T |
43665938 |
gatgaacggacgacggcgaccgaagcgtgaagtgcaacgatcactgtgataaccgacaatcggttggacaagcatccccgagattgggccgcagagccag |
43666037 |
T |
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| Q |
111 |
atgtacgcggcccaagtatgggggataccgagtaactgaacatagggagttaaaagtgaaagctgtagggcccagccaaactgaacacctgctgctatgg |
210 |
Q |
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| T |
43666038 |
atgtatgcggcccaagtatgggggataccgagtaactgaacatagggagttaaaagtgaaagctgtagggcccagccaaactgaacacctgctgctatgg |
43666137 |
T |
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| Q |
211 |
aagcaacgactatgatcttacggagaggacttggttcaagtggtggagattcaacatgaagagaaggtttagttagag |
288 |
Q |
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| T |
43666138 |
aagcaacgactatgatcttacggagaggactaggttcaagtggtggagattcaacatgaagagaaggtttagttagag |
43666215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 43666229 - 43666269
Alignment:
| Q |
308 |
atgattttgtttagtggaagagagaggctccatagtgatga |
348 |
Q |
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| T |
43666229 |
atgattttgtttagtggaagagaaaggctccatagtgatga |
43666269 |
T |
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