View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20144_low_1 (Length: 452)

Name: NF20144_low_1
Description: NF20144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20144_low_1
NF20144_low_1
[»] chr6 (8 HSPs)
chr6 (14-294)||(6865223-6865503)
chr6 (371-436)||(6864880-6864945)
chr6 (228-298)||(31144694-31144764)
chr6 (229-290)||(30416922-30416983)
chr6 (243-299)||(32006914-32006970)
chr6 (386-436)||(6132728-6132778)
chr6 (241-290)||(1520911-1520960)
chr6 (230-290)||(32828856-32828916)
[»] chr5 (15 HSPs)
chr5 (230-305)||(21743014-21743089)
chr5 (116-188)||(25256989-25257061)
chr5 (116-188)||(25320779-25320851)
chr5 (120-233)||(33639585-33639699)
chr5 (125-213)||(5355450-5355539)
chr5 (241-290)||(27788487-27788536)
chr5 (120-188)||(4518054-4518122)
chr5 (120-188)||(15711860-15711932)
chr5 (120-213)||(2883930-2884024)
chr5 (238-284)||(41328616-41328662)
chr5 (120-161)||(18016282-18016323)
chr5 (230-305)||(3103152-3103227)
chr5 (260-310)||(30264580-30264630)
chr5 (241-290)||(16499352-16499401)
chr5 (266-306)||(28601929-28601969)
[»] chr7 (7 HSPs)
chr7 (237-298)||(31448371-31448432)
chr7 (236-290)||(10248809-10248863)
chr7 (230-298)||(28885482-28885550)
chr7 (230-305)||(19989079-19989154)
chr7 (125-222)||(47270670-47270768)
chr7 (119-211)||(23311526-23311619)
chr7 (230-298)||(9077532-9077600)
[»] chr4 (12 HSPs)
chr4 (230-302)||(4473058-4473130)
chr4 (230-298)||(32564829-32564897)
chr4 (119-195)||(25200525-25200602)
chr4 (116-213)||(19904178-19904276)
chr4 (230-295)||(7209068-7209133)
chr4 (137-213)||(56269337-56269414)
chr4 (230-298)||(14613564-14613631)
chr4 (120-211)||(32150033-32150125)
chr4 (236-298)||(22198197-22198259)
chr4 (127-176)||(35478819-35478868)
chr4 (123-199)||(23119354-23119428)
chr4 (120-188)||(31264590-31264658)
[»] chr1 (11 HSPs)
chr1 (230-305)||(6951038-6951112)
chr1 (232-298)||(46836379-46836445)
chr1 (120-188)||(8711011-8711080)
chr1 (241-305)||(10170455-10170519)
chr1 (122-188)||(16242217-16242283)
chr1 (137-213)||(35460563-35460640)
chr1 (230-290)||(7255134-7255194)
chr1 (241-305)||(11248643-11248707)
chr1 (120-212)||(42080261-42080353)
chr1 (229-290)||(24679109-24679170)
chr1 (230-290)||(6380166-6380226)
[»] chr2 (14 HSPs)
chr2 (236-294)||(43939443-43939501)
chr2 (230-298)||(12457025-12457093)
chr2 (237-298)||(9154142-9154203)
chr2 (229-295)||(41877565-41877629)
chr2 (248-305)||(38376600-38376657)
chr2 (230-298)||(12890272-12890340)
chr2 (236-296)||(33810626-33810686)
chr2 (266-305)||(19477210-19477249)
chr2 (125-188)||(24665281-24665344)
chr2 (247-298)||(39028779-39028830)
chr2 (236-298)||(14949241-14949303)
chr2 (222-307)||(38985124-38985209)
chr2 (229-289)||(21924835-21924895)
chr2 (138-213)||(29239109-29239185)
[»] chr8 (12 HSPs)
chr8 (240-299)||(24802565-24802624)
chr8 (113-185)||(22593922-22593994)
chr8 (240-298)||(1673907-1673965)
chr8 (122-188)||(5988078-5988144)
chr8 (229-298)||(38125583-38125652)
chr8 (230-298)||(15196500-15196568)
chr8 (120-213)||(32957596-32957695)
chr8 (230-305)||(36430424-36430499)
chr8 (137-188)||(40468452-40468503)
chr8 (125-206)||(9195876-9195959)
chr8 (150-212)||(33709221-33709283)
chr8 (230-290)||(4410796-4410856)
[»] chr3 (9 HSPs)
chr3 (120-213)||(24486224-24486318)
chr3 (122-188)||(41351494-41351560)
chr3 (237-298)||(42380558-42380619)
chr3 (237-298)||(42409272-42409333)
chr3 (230-305)||(33896653-33896728)
chr3 (121-196)||(40493931-40494007)
chr3 (120-188)||(49341145-49341213)
chr3 (118-161)||(39396922-39396965)
chr3 (132-188)||(4698934-4698990)
[»] scaffold0009 (1 HSPs)
scaffold0009 (228-305)||(143351-143428)
[»] scaffold0263 (1 HSPs)
scaffold0263 (230-284)||(13373-13427)
[»] scaffold0002 (1 HSPs)
scaffold0002 (230-284)||(92001-92055)
[»] scaffold0005 (1 HSPs)
scaffold0005 (230-298)||(203745-203812)


Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 14 - 294
Target Start/End: Complemental strand, 6865503 - 6865223
Alignment:
Q  14 aatatccaagttatgttttattgtgaagtcaatttgcacattacattgtagccaatcccacttctcatgaaggacaaaatatattcaaatgagtttttaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6865503 aatatccaagttatgttttattgtgaagtcaatttgcacattacattgtagccaatcgcacttctcatgaaggacaaaatatattcaaatgagtttttaa 6865404  T
Q  114 catttggagttaagatcctctctatttgctaaaaataaatggacaatgttatttagcgagagatagatacaaaaagtatgtagtggatcctaccactaag 213  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||| ||| ||||    
T  6865403 catttggagttaacatcctctctatttgctaaaaataaatgaacaatgttatttagcgagagatagatataaaaagtatgtagtgggtcctgccattaag 6865304  T
Q  214 cgtgtcccataactattactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatgga 294  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  6865303 cgtgtcccataactactactccctctgtccctgtatgtaagcatcctttgcatctaataaaagggtgcttagatatatgga 6865223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 371 - 436
Target Start/End: Complemental strand, 6864945 - 6864880
Alignment:
Q  371 attatttgtattttatattggtgcagatgttgcattagcattaatacaacatgatggtacacaaat 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6864945 attatttgtattttatattggtgcagatgttgcattagcattaatacaacatgatggtacacaaat 6864880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 228 - 298
Target Start/End: Original strand, 31144694 - 31144764
Alignment:
Q  228 attactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacgga 298  Q
    ||||||| |||||||||| ||| |||||||||||| | ||||||||||||||||||  ||||| |||||||    
T  31144694 attactccctccgtccctatatataagcactctttccttctaataaaagggtgcttctatataaggacgga 31144764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 30416922 - 30416983
Alignment:
Q  229 ttactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatata 290  Q
    |||||| |||||||||| |||||||| ||||||||| |||||||||||| |||||| |||||    
T  30416922 ttactccctccgtccctatatgtaagaactctttgcctctaataaaaggatgcttacatata 30416983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 32006970 - 32006914
Alignment:
Q  243 cctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacggat 299  Q
    ||||| |||||||||  |||||||||||||||||||| |||||||||| ||||||||    
T  32006970 cctgtgtgtaagcaccgtttgcatctaataaaagggtacttagatatagggacggat 32006914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 436
Target Start/End: Complemental strand, 6132778 - 6132728
Alignment:
Q  386 tattggtgcagatgttgcattagcattaatacaacatgatggtacacaaat 436  Q
    ||||| |||||||||||||  ||||||||| ||||||||||||||||||||    
T  6132778 tattgttgcagatgttgcagcagcattaatccaacatgatggtacacaaat 6132728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 1520911 - 1520960
Alignment:
Q  241 tccctgtatgtaagcactctttgcatctaataaaagggtgcttagatata 290  Q
    ||||| ||| ||||||| |||||| |||||||||||||||||||||||||    
T  1520911 tccctatatttaagcacactttgcctctaataaaagggtgcttagatata 1520960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 32828856 - 32828916
Alignment:
Q  230 tactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatata 290  Q
    ||||| |||| ||| |||||||||||||  |||||||||||||||||| || |||||||||    
T  32828856 tactccctccatccttgtatgtaagcaccatttgcatctaataaaaggatgtttagatata 32828916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 21743014 - 21743089
Alignment:
Q  230 tactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacggatgaagta 305  Q
    ||||| |||||||| | |||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||    
T  21743014 tactccctccgtccttatatgtaagcactctttgcctctaataaaagagtgcttagatatagggacggatgaagta 21743089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 25257061 - 25256989
Alignment:
Q  116 tttggagttaagatcctctctatttgctaaaaataaatggacaatgttatttagcgagagatagatacaaaaa 188  Q
    |||| |||||||||||| |  |||||||||||||||||||||||||| |||| | ||||||||||||||||||    
T  25257061 tttgaagttaagatcctatacatttgctaaaaataaatggacaatgtcattttgtgagagatagatacaaaaa 25256989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 25320851 - 25320779
Alignment:
Q  116 tttggagttaagatcctctctatttgctaaaaataaatggacaatgttatttagcgagagatagatacaaaaa 188  Q
    |||| |||||||||||| |  |||||||||||||||||||||||||| |||| | ||||||||||||||||||    
T  25320851 tttgaagttaagatcctatacatttgctaaaaataaatggacaatgtcattttgtgagagatagatacaaaaa 25320779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 120 - 233
Target Start/End: Complemental strand, 33639699 - 33639585
Alignment:
Q  120 gagttaagatcctctctatttgctaaaaataaatggacaatgttatttagcgagagatagatac-aaaaagtatgtagtggatcctaccactaagcgtgt 218  Q
    |||||||||||||||  |||| ||||||  ||||| | |||||||||| || ||||||| |||| |||||||||||| ||||||||||||||||  | ||    
T  33639699 gagttaagatcctcttcattttctaaaagcaaatgaataatgttatttggcaagagataaatacgaaaaagtatgtaatggatcctaccactaaatgagt 33639600  T
Q  219 cccataactattact 233  Q
    | ||| |||||||||    
T  33639599 ctcattactattact 33639585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 5355539 - 5355450
Alignment:
Q  125 aagatcctctctatttgctaaaaataaatggacaatgttatttagcgagagatagataca-aaaagtatgtagtggatcctaccactaag 213  Q
    |||||| |||| ||||| | |||| |||| || |||||||||| | |||||||||||||| |||||||||||||||||||||||| ||||    
T  5355539 aagatcatctccatttgtttaaaagaaatagataatgttatttggtgagagatagatacaaaaaagtatgtagtggatcctaccattaag 5355450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 27788536 - 27788487
Alignment:
Q  241 tccctgtatgtaagcactctttgcatctaataaaagggtgcttagatata 290  Q
    |||||||||||||| ||  |||||||||||||||||||||||||||||||    
T  27788536 tccctgtatgtaagtaccttttgcatctaataaaagggtgcttagatata 27788487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 4518054 - 4518122
Alignment:
Q  120 gagttaagatcctctctatttgctaaaaataaatggacaatgttatttagcgagagatagatacaaaaa 188  Q
    ||||| |||||||||| |||| || |||||||| ||| ||||| |||||| ||||||||||||||||||    
T  4518054 gagttgagatcctctccatttacttaaaataaacggagaatgtcatttagtgagagatagatacaaaaa 4518122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 15711860 - 15711932
Alignment:
Q  120 gagttaagatcctctc----tatttgctaaaaataaatggacaatgttatttagcgagagatagatacaaaaa 188  Q
    ||||||||||||||||    |||||| |||||||||||||| ||||| |||||| |||||||| |||||||||    
T  15711860 gagttaagatcctctcaatatatttgttaaaaataaatggataatgtcatttagtgagagatatatacaaaaa 15711932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 213
Target Start/End: Complemental strand, 2884024 - 2883930
Alignment:
Q  120 gagttaagatcctctctatttgctaaaaataaatggacaatgttatttagcgagagatagatac-aaaaagtatgtagtggatcctaccactaag 213  Q
    |||| ||||| |||| |||||||| |||||||||||| ||||| |||| | || ||||| |||| ||||| ||| || |||||||||||||||||    
T  2884024 gagtaaagatactctttatttgcttaaaataaatggagaatgtcatttggtgaaagatatatacaaaaaattatataatggatcctaccactaag 2883930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 41328662 - 41328616
Alignment:
Q  238 ccgtccctgtatgtaagcactctttgcatctaataaaagggtgctta 284  Q
    |||||||||||||||||||| |||| | |||||||||||||||||||    
T  41328662 ccgtccctgtatgtaagcaccctttccctctaataaaagggtgctta 41328616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 18016282 - 18016323
Alignment:
Q  120 gagttaagatcctctctatttgctaaaaataaatggacaatg 161  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  18016282 gagttaagatcctctccatttgctaaaattaaatggacaatg 18016323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 3103227 - 3103152
Alignment:
Q  230 tactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacggatgaagta 305  Q
    |||||||| ||||||| ||| ||||||| |||| | ||||||||||||||| ||| ||||| | ||||||| ||||    
T  3103227 tactctcttcgtccctatatataagcaccctttacctctaataaaagggtgtttatatataggaacggatggagta 3103152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 310
Target Start/End: Original strand, 30264580 - 30264630
Alignment:
Q  260 tttgcatctaataaaagggtgcttagatatatggacggatgaagtaattat 310  Q
    ||||| ||||||||||| ||||||||||||| ||||||| | |||||||||    
T  30264580 tttgcctctaataaaagagtgcttagatatagggacggagggagtaattat 30264630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 16499401 - 16499352
Alignment:
Q  241 tccctgtatgtaagcactctttgcatctaataaaagggtgcttagatata 290  Q
    |||||| |||||| |||  ||||||||||||||||||||||||| |||||    
T  16499401 tccctgcatgtaaacaccatttgcatctaataaaagggtgcttaaatata 16499352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 28601969 - 28601929
Alignment:
Q  266 tctaataaaagggtgcttagatatatggacggatgaagtaa 306  Q
    ||||||||||||||||||||||||| | ||||| |||||||    
T  28601969 tctaataaaagggtgcttagatataagaacggaggaagtaa 28601929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 31448371 - 31448432
Alignment:
Q  237 tccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacgga 298  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  31448371 tccgtccctatatgtaagcaccctttgcatctaataaaagggtgcttagatatagggacgga 31448432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 10248809 - 10248863
Alignment:
Q  236 ctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatata 290  Q
    |||||||||| ||| |||||||||||| |||||||||||||||||||||||||||    
T  10248809 ctccgtccctctatataagcactctttacatctaataaaagggtgcttagatata 10248863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 28885482 - 28885550
Alignment:
Q  230 tactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacgga 298  Q
    |||||||||||||||| |||||||||||  ||| | ||||||||||||||||||| ||||| |||||||    
T  28885482 tactctctccgtccctatatgtaagcaccattttcctctaataaaagggtgcttacatataaggacgga 28885550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 19989079 - 19989154
Alignment:
Q  230 tactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacggatgaagta 305  Q
    ||||| |||||| ||| |||||||||||  ||||| |||||||||| |||||||||||||| ||||||| ||||||    
T  19989079 tactccctccgttcctatatgtaagcaccatttgcctctaataaaatggtgcttagatatagggacggaggaagta 19989154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 47270768 - 47270670
Alignment:
Q  125 aagatcctctctatttgctaaaaataaatggacaatgttatttagcgagagatagatac-aaaaagtatgtagtggatcctaccactaagcgtgtccca 222  Q
    ||||||||||||||||| | |||||||||||| ||||  |||| |  ||| ||||| || |||||||| |||||||||| |||||||||| | ||||||    
T  47270768 aagatcctctctatttgtttaaaataaatggataatgccatttggtaagatatagaaacaaaaaagtaggtagtggatcataccactaagtgagtccca 47270670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 23311619 - 23311526
Alignment:
Q  119 ggagttaagatcctctctatttgctaaaaataaatggacaatgttatttagcgagagatagatac-aaaaagtatgtagtggatcctaccacta 211  Q
    ||||||||||||||||| ||||||||||| |||||||| || |  || | | ||| ||||  ||| |||||||||||| |||||||||||||||    
T  23311619 ggagttaagatcctctccatttgctaaaagtaaatggataacgccatgttgtgagtgatatgtacaaaaaagtatgtaatggatcctaccacta 23311526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 9077600 - 9077532
Alignment:
Q  230 tactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacgga 298  Q
    ||||| ||| |||||| ||||||| |||||||| | ||||||||||| ||||||| ||||| |||||||    
T  9077600 tactccctctgtccctatatgtaaacactctttccctctaataaaagagtgcttaaatataaggacgga 9077532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 4473058 - 4473130
Alignment:
Q  230 tactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacggatgaa 302  Q
    |||||||||||||||| |||||||||||||||||| |||||||||| |||||||| ||||| |||| ||||||    
T  4473058 tactctctccgtccctatatgtaagcactctttgcctctaataaaaaggtgcttacatatagggacagatgaa 4473130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 32564829 - 32564897
Alignment:
Q  230 tactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacgga 298  Q
    ||||| |||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| |||||||    
T  32564829 tactccctccgtccctatatgtaagcactctttgcctctaataaaagggtgcttacatatagggacgga 32564897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 25200602 - 25200525
Alignment:
Q  119 ggagttaagatcctctctatttgctaaaaataaatggacaatgttatttagcgagagatagatacaa-aaagtatgta 195  Q
    |||||||||||| |||||||||| ||||||||||||||||||   |||||| |||||||| |||||| ||||||||||    
T  25200602 ggagttaagatcatctctatttggtaaaaataaatggacaatcccatttagtgagagataaatacaagaaagtatgta 25200525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 19904178 - 19904276
Alignment:
Q  116 tttggagttaagatcctctctatttgctaaaaataaatggacaatgttatttagcgagagatagatac-aaaaagtatgtagtggatcctaccactaag 213  Q
    |||| ||||||||||||||||||||||||||||||||| || ||| | ||||   ||||| ||||||| ||||||| |||| | | |||||||||||||    
T  19904178 tttgtagttaagatcctctctatttgctaaaaataaattgataatatcatttgctgagaggtagatacgaaaaagtgtgtactcggtcctaccactaag 19904276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 7209133 - 7209068
Alignment:
Q  230 tactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggac 295  Q
    ||||| |||||||||| |||||||||||||||||  ||||||||||  ||||||||||||| ||||    
T  7209133 tactccctccgtccctatatgtaagcactctttgtctctaataaaaaagtgcttagatatagggac 7209068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 56269337 - 56269414
Alignment:
Q  137 atttgctaaaaataaatggacaatgttatttagcgagagatagatacaaaa-agtatgtagtggatcctaccactaag 213  Q
    ||||||| ||| |||||||| ||||| |||| | |||||||| |||||||| |||||||||||| |||||||||||||    
T  56269337 atttgcttaaagtaaatggataatgtcatttggtgagagataaatacaaaaaagtatgtagtgggtcctaccactaag 56269414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 14613631 - 14613564
Alignment:
Q  230 tactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacgga 298  Q
    |||||||||||| ||||||||||| ||| ||||  ||||||||||||||| |||||| ||| |||||||    
T  14613631 tactctctccgttcctgtatgtaatcac-ctttatatctaataaaagggtacttagacatagggacgga 14613564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 211
Target Start/End: Original strand, 32150033 - 32150125
Alignment:
Q  120 gagttaagatcctctctatttgctaaaaataaatggacaatgttatttagcgagagatagatac-aaaaagtatgtagtggatcctaccacta 211  Q
    ||||||||||| |||| ||||||||||| |||||||| | ||  |||| | |||||||| |||| ||||| |||||||||| |||||| ||||    
T  32150033 gagttaagatcatctccatttgctaaaagtaaatggatattgccatttggtgagagatatatactaaaaaatatgtagtgggtcctactacta 32150125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 298
Target Start/End: Original strand, 22198197 - 22198259
Alignment:
Q  236 ctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacgga 298  Q
    ||||||||| | |||||| ||| |||| ||||||||||||||||| ||| ||||| |||||||    
T  22198197 ctccgtcccagcatgtaaacaccctttacatctaataaaagggtgtttaaatataaggacgga 22198259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 35478819 - 35478868
Alignment:
Q  127 gatcctctctatttgctaaaaataaatggacaatgttatttagcgagaga 176  Q
    ||||||||| ||||| | |||||||||||| |||||||||||| ||||||    
T  35478819 gatcctctccatttgtttaaaataaatggagaatgttatttagtgagaga 35478868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 23119354 - 23119428
Alignment:
Q  123 ttaagatcctctctatttgctaaaaataaatggacaatgttatttagcgagagatagatacaaaaagtatgtagtgg 199  Q
    ||||||| ||||| ||||| ||||| |||||||||||||  |||||  |||||||| ||| ||||||||||||||||    
T  23119354 ttaagattctctccatttgttaaaa-taaatggacaatgc-atttattgagagataaatagaaaaagtatgtagtgg 23119428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 31264658 - 31264590
Alignment:
Q  120 gagttaagatcctctctatttgctaaaaataaatggacaatgttatttagcgagagatagatacaaaaa 188  Q
    |||||||||||||||| |||| || |||| ||||||| ||||| ||||   |||||||||| |||||||    
T  31264658 gagttaagatcctctccatttacttaaaacaaatggataatgtcatttgatgagagatagacacaaaaa 31264590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 6951038 - 6951112
Alignment:
Q  230 tactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacggatgaagta 305  Q
    |||||||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||| |||||||| |||||    
T  6951038 tactctctccgtcc-tatatgtaagcacactttgcctctaataaaagggtgcttagatataaggacggataaagta 6951112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 232 - 298
Target Start/End: Original strand, 46836379 - 46836445
Alignment:
Q  232 ctctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacgga 298  Q
    |||||||||||| | |||||||||||  ||||| ||||||||||||||||||||||||| |||||||    
T  46836379 ctctctccgtccttatatgtaagcacattttgcctctaataaaagggtgcttagatatagggacgga 46836445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 8711080 - 8711011
Alignment:
Q  120 gagttaagatcctctctatttgct-aaaaataaatggacaatgttatttagcgagagatagatacaaaaa 188  Q
    |||| ||||||||||| ||||||| ||||||||||||| ||||| |||| | ||||||||||||||||||    
T  8711080 gagtcaagatcctctccatttgcttaaaaataaatggataatgtcatttggtgagagatagatacaaaaa 8711011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 10170519 - 10170455
Alignment:
Q  241 tccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacggatgaagta 305  Q
    ||||| |||||||| ||  |||||||||||||||| |||||||||||||||||||| ||| ||||    
T  10170519 tccctttatgtaagtaccatttgcatctaataaaatggtgcttagatatatggacgcatggagta 10170455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 16242217 - 16242283
Alignment:
Q  122 gttaagatcctctctatttgctaaaaataaatggacaatgttatttagcgagagatagatacaaaaa 188  Q
    ||||||||| |||  ||||||| ||||| |||||||||||| |||| | ||||||||||||||||||    
T  16242217 gttaagatcgtcttcatttgcttaaaatcaatggacaatgtcatttggtgagagatagatacaaaaa 16242283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 35460563 - 35460640
Alignment:
Q  137 atttgctaaaaataaatggacaatgttatttagcgagagatagatac-aaaaagtatgtagtggatcctaccactaag 213  Q
    |||| ||||||||||||||| ||| | |||||| ||||||||||||| ||||||||| || ||| ||||| |||||||    
T  35460563 atttactaaaaataaatggagaatctcatttagtgagagatagatacaaaaaagtatataatgggtcctatcactaag 35460640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 7255134 - 7255194
Alignment:
Q  230 tactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatata 290  Q
    ||||| |||||||||| |||||||||||  ||| | ||||||||||||||||||| |||||    
T  7255134 tactccctccgtccctatatgtaagcacattttccctctaataaaagggtgcttacatata 7255194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 11248707 - 11248643
Alignment:
Q  241 tccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacggatgaagta 305  Q
    ||||| |||||||||||  ||||| ||||||||||  ||||||||||||| ||||||| ||||||    
T  11248707 tccctatatgtaagcaccatttgcctctaataaaatagtgcttagatatagggacggaggaagta 11248643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 42080261 - 42080353
Alignment:
Q  120 gagttaagatcctctctatttgctaaaaataaatggacaatgttatttagcgagagatagatacaaaaagtatgtagtggatcctaccactaa 212  Q
    ||||||||||  | || |||||||||||||||||||| |||   |||| | ||||||||||||| |||| |||| ||||||| || |||||||    
T  42080261 gagttaagatattttccatttgctaaaaataaatggaaaattcaatttggtgagagatagataccaaaaatatgaagtggattctgccactaa 42080353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 24679170 - 24679109
Alignment:
Q  229 ttactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatata 290  Q
    |||||| ||||||||||  |||||| |||||||| | | ||||||||||||||||| |||||    
T  24679170 ttactccctccgtccctaaatgtaaacactctttccctttaataaaagggtgcttaaatata 24679109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 6380226 - 6380166
Alignment:
Q  230 tactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatata 290  Q
    ||||| |||||| ||| || ||||||||  ||||  |||||||||||||||||||||||||    
T  6380226 tactccctccgttcctctaggtaagcaccttttgtctctaataaaagggtgcttagatata 6380166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 236 - 294
Target Start/End: Original strand, 43939443 - 43939501
Alignment:
Q  236 ctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatgga 294  Q
    |||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||    
T  43939443 ctccgtccctatatgtaagcactatttgcctctaataaaagggtgcttagatatatgga 43939501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 12457093 - 12457025
Alignment:
Q  230 tactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacgga 298  Q
    ||||| ||| |||||| ||||||||||| |||||| ||||||||||||||||||||||||| |||||||    
T  12457093 tactccctctgtccctatatgtaagcaccctttgcctctaataaaagggtgcttagatatagggacgga 12457025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 9154142 - 9154203
Alignment:
Q  237 tccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacgga 298  Q
    ||||||||| ||||||| ||| |||| | ||||||||||||||||||||||||| |||||||    
T  9154142 tccgtccctatatgtaaccacccttttcctctaataaaagggtgcttagatatagggacgga 9154203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 295
Target Start/End: Complemental strand, 41877629 - 41877565
Alignment:
Q  229 ttactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggac 295  Q
    |||||| ||||||||||  ||||||||||||||| | ||||||||||| ||||||||||||| ||||    
T  41877629 ttactccctccgtccct--atgtaagcactcttttcttctaataaaagtgtgcttagatatagggac 41877565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 248 - 305
Target Start/End: Original strand, 38376600 - 38376657
Alignment:
Q  248 atgtaagcactctttgcatctaataaaagggtgcttagatatatggacggatgaagta 305  Q
    ||||||||| | ||||| |||||||||||||||||||||| || | ||||||||||||    
T  38376600 atgtaagcattatttgcctctaataaaagggtgcttagatgtaagaacggatgaagta 38376657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 12890340 - 12890272
Alignment:
Q  230 tactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacgga 298  Q
    |||||||||| |||||  ||||||||||  ||| | |||||||||||| |||||||||||| |||||||    
T  12890340 tactctctccatccctaaatgtaagcaccattttcctctaataaaaggatgcttagatatagggacgga 12890272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 296
Target Start/End: Complemental strand, 33810686 - 33810626
Alignment:
Q  236 ctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacg 296  Q
    |||||||||| |||||||||||  ||| | ||||||||||||||||||| ||||| |||||    
T  33810686 ctccgtccctatatgtaagcacaattttcctctaataaaagggtgcttacatatagggacg 33810626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 305
Target Start/End: Original strand, 19477210 - 19477249
Alignment:
Q  266 tctaataaaagggtgcttagatatatggacggatgaagta 305  Q
    ||||||||||||||||||||||||| ||||||||| ||||    
T  19477210 tctaataaaagggtgcttagatatagggacggatggagta 19477249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 24665344 - 24665281
Alignment:
Q  125 aagatcctctctatttgctaaaaataaatggacaatgttatttagcgagagatagatacaaaaa 188  Q
    |||||| |||||||||| | |||||||||| | |||  ||||||| ||||||||||||||||||    
T  24665344 aagatcatctctatttgtttaaaataaatgaataattctatttagtgagagatagatacaaaaa 24665281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 298
Target Start/End: Original strand, 39028779 - 39028830
Alignment:
Q  247 tatgtaagcactctttgcatctaataaaagggtgcttagatatatggacgga 298  Q
    |||||||||||  ||||||||||| |||||||||||| |||||| |||||||    
T  39028779 tatgtaagcaccatttgcatctaacaaaagggtgctttgatatagggacgga 39028830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 14949303 - 14949241
Alignment:
Q  236 ctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacgga 298  Q
    ||||||| || |||||||||||  ||||| ||||||||||| |||||||||| || |||||||    
T  14949303 ctccgtctctatatgtaagcaccatttgcctctaataaaagagtgcttagatgtagggacgga 14949241  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 38985209 - 38985124
Alignment:
Q  222 ataactattactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacggatgaagtaat 307  Q
    |||| ||||||||  ||||||||| ||| |||||||  ||| | ||||||||||| ||||||| ||||| ||||||| | ||||||    
T  38985209 ataaatattactccttccgtccctatatataagcaccatttccctctaataaaagagtgcttatatatagggacggagggagtaat 38985124  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 21924835 - 21924895
Alignment:
Q  229 ttactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatat 289  Q
    |||||| |||||||||| ||| |||||||  ||| | ||||||||||||||||||| ||||    
T  21924835 ttactccctccgtccctatatataagcaccttttacctctaataaaagggtgcttaaatat 21924895  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 213
Target Start/End: Original strand, 29239109 - 29239185
Alignment:
Q  138 tttgctaaaaataaatggacaatgttatttagcgagagatagatac-aaaaagtatgtagtggatcctaccactaag 213  Q
    |||||||||| |||||||||||||| |||  | ||||||| ||||| ||||| |||||||| |||| ||||| ||||    
T  29239109 tttgctaaaattaaatggacaatgtcattctgtgagagatggatacaaaaaaatatgtagtagatcttaccattaag 29239185  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 299
Target Start/End: Original strand, 24802565 - 24802624
Alignment:
Q  240 gtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacggat 299  Q
    |||||| |||||||||||  ||||||||||||||||||||||||||||||| ||||||||    
T  24802565 gtccctatatgtaagcaccttttgcatctaataaaagggtgcttagatatagggacggat 24802624  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 22593922 - 22593994
Alignment:
Q  113 acatttggagttaagatcctctctatttgctaaaaataaatggacaatgttatttagcgagagatagatacaa 185  Q
    |||||| |||||||||||||||| ||||||| |||||||||||||||||| |||| |  || |||||||||||    
T  22593922 acattttgagttaagatcctctccatttgcttaaaataaatggacaatgtcatttggtaagcgatagatacaa 22593994  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 240 - 298
Target Start/End: Complemental strand, 1673965 - 1673907
Alignment:
Q  240 gtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacgga 298  Q
    ||||||||||||||||||  ||||||||| ||||||||||||||||||| | |||||||    
T  1673965 gtccctgtatgtaagcaccttttgcatctgataaaagggtgcttagatacaaggacgga 1673907  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 5988078 - 5988144
Alignment:
Q  122 gttaagatcctctctatttgctaaaaataaatggacaatgttatttagcgagagatagatacaaaaa 188  Q
    |||||||||||||| ||||||| |||||||||| ||||| | |||||| |||||||||||| |||||    
T  5988078 gttaagatcctctcaatttgcttaaaataaatgaacaatatcatttagtgagagatagatataaaaa 5988144  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 298
Target Start/End: Original strand, 38125583 - 38125652
Alignment:
Q  229 ttactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacgga 298  Q
    |||||| |||||||| | |||||||||||  ||||| ||||||||||||||||||| ||||| |||||||    
T  38125583 ttactccctccgtccatatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacgga 38125652  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 15196500 - 15196568
Alignment:
Q  230 tactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacgga 298  Q
    ||||| |||||||||| ||||||||||   ||| | ||||||||||||||||||||||||| |||||||    
T  15196500 tactccctccgtccctatatgtaagcatctttttcttctaataaaagggtgcttagatatagggacgga 15196568  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 213
Target Start/End: Original strand, 32957596 - 32957695
Alignment:
Q  120 gagttaagatcctctctatttgctaaaaataaatggacaatgttat-----ttagcgagagatagatacaaaa-agtatgtagtggatcctaccactaag 213  Q
    ||||||| ||| |||| |||||||||||||||| ||| ||| | ||     |||| ||||||||||||||||| ||||||||||||||| ||||||||||    
T  32957596 gagttaaaatcatctccatttgctaaaaataaaaggataatataatatcatttagtgagagatagatacaaaaaagtatgtagtggatcttaccactaag 32957695  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 36430499 - 36430424
Alignment:
Q  230 tactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacggatgaagta 305  Q
    ||||| |||||||||| |||||||||||    ||| ||||||||||||||||||| ||||| ||||||| ||||||    
T  36430499 tactccctccgtccctatatgtaagcacaaggtgcctctaataaaagggtgcttaaatatagggacggaggaagta 36430424  T

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Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 40468452 - 40468503
Alignment:
Q  137 atttgctaaaaataaatggacaatgttatttagcgagagatagatacaaaaa 188  Q
    |||||||||||||||||||| ||||| |||||  ||||||||||||||||||    
T  40468452 atttgctaaaaataaatggataatgtcatttaatgagagatagatacaaaaa 40468503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 9195876 - 9195959
Alignment:
Q  125 aagatcctctctatttgctaaaaataaatggacaatgttatttagcgagagatagatac--aaaaagtatgtagtggatcctac 206  Q
    ||||||||||| ||||||||||| |||||||| ||| | |||| | |||||||| ||||  ||||||||| || ||||||||||    
T  9195876 aagatcctctccatttgctaaaagtaaatggataatatcattttgtgagagataaatacaaaaaaagtatataatggatcctac 9195959  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 33709283 - 33709221
Alignment:
Q  150 aaatggacaatgttatttagcgagagatagatacaaaaagtatgtagtggatcctaccactaa 212  Q
    ||||||| |||||||||| | || |||||||||||||||  ||||||||| | ||||||||||    
T  33709283 aaatggataatgttatttggtgatagatagatacaaaaaacatgtagtgggttctaccactaa 33709221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 4410796 - 4410856
Alignment:
Q  230 tactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatata 290  Q
    ||||| |||||||||| ||| ||||||| |||||  ||||||||||| ||||||| |||||    
T  4410796 tactccctccgtccctatatataagcaccctttgtctctaataaaagagtgcttatatata 4410856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 120 - 213
Target Start/End: Original strand, 24486224 - 24486318
Alignment:
Q  120 gagttaagatcctctctatttgctaaaaataaatggacaatgttatttagcgagagatagatac-aaaaagtatgtagtggatcctaccactaag 213  Q
    ||||||| ||||||||||||||||||||||||||| | |||||||||| | || ||||| |||| |||||||| || |||| || ||| ||||||    
T  24486224 gagttaaaatcctctctatttgctaaaaataaatgaataatgttatttggtgatagatatatacgaaaaagtaagtcgtgggtcttactactaag 24486318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 41351560 - 41351494
Alignment:
Q  122 gttaagatcctctctatttgctaaaaataaatggacaatgttatttagcgagagatagatacaaaaa 188  Q
    |||||||| |||||||||||||||||||||||| | ||||| |||| | |||||||||| |||||||    
T  41351560 gttaagattctctctatttgctaaaaataaatgaataatgtcattttgtgagagatagacacaaaaa 41351494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 42380558 - 42380619
Alignment:
Q  237 tccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacgga 298  Q
    ||||||||| ||||||||||| |||||| ||||||||||||||  ||||||||| |||||||    
T  42380558 tccgtccctatatgtaagcaccctttgcctctaataaaagggtttttagatatagggacgga 42380619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 42409272 - 42409333
Alignment:
Q  237 tccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacgga 298  Q
    ||||||||| ||||||||||| |||||| ||||||||||||||  ||||||||| |||||||    
T  42409272 tccgtccctatatgtaagcaccctttgcctctaataaaagggtttttagatatagggacgga 42409333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 33896728 - 33896653
Alignment:
Q  230 tactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacggatgaagta 305  Q
    ||||| |||||||||| ||||||| |||  ||||| |||||| |||||||||||| ||||| ||||||| ||||||    
T  33896728 tactccctccgtccctatatgtaaacaccatttgcctctaatgaaagggtgcttatatatagggacggaagaagta 33896653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 40494007 - 40493931
Alignment:
Q  121 agttaagatcctctctatttgctaaaaataaatggacaatgttatttagcgagagatagatac-aaaaagtatgtag 196  Q
    ||||| ||||||||| ||||||| |||| ||||||||||||||||||   |||| ||| |||| |||||||||||||    
T  40494007 agttatgatcctctccatttgcttaaaacaaatggacaatgttatttgatgagaaataaatacaaaaaagtatgtag 40493931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 49341145 - 49341213
Alignment:
Q  120 gagttaagatcctctctatttgctaaaaataaatggacaatgttatttagcgagagatagatacaaaaa 188  Q
    ||||||||||| |||  ||||||| |||||||||||||||||| |||| |  ||||||| |||||||||    
T  49341145 gagttaagatcttcttcatttgcttaaaataaatggacaatgtcatttgggaagagatatatacaaaaa 49341213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 161
Target Start/End: Original strand, 39396922 - 39396965
Alignment:
Q  118 tggagttaagatcctctctatttgctaaaaataaatggacaatg 161  Q
    ||||||||| |||||||||||||| |||||||||||||| ||||    
T  39396922 tggagttaaaatcctctctatttgttaaaaataaatggataatg 39396965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 4698934 - 4698990
Alignment:
Q  132 tctctatttgctaaaaataaatggacaatgttatttagcgagagatagatacaaaaa 188  Q
    |||| |||| |||||||||||| || ||||| |||| | ||||||||||||||||||    
T  4698934 tctccatttactaaaaataaatagataatgtcatttggtgagagatagatacaaaaa 4698990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 305
Target Start/End: Complemental strand, 143428 - 143351
Alignment:
Q  228 attactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacggatgaagta 305  Q
    ||||||| |||||||||| ||||||||||  |||||| ||||||||||||||| ||| ||||| |||| || ||||||    
T  143428 attactccctccgtccctatatgtaagcatcctttgcctctaataaaagggtgtttacatatagggacagaggaagta 143351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 13373 - 13427
Alignment:
Q  230 tactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgctta 284  Q
    ||||| |||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  13373 tactccctccgtccctatatgtaagcaccttttgcatctaatagaagggtgctta 13427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 92001 - 92055
Alignment:
Q  230 tactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgctta 284  Q
    ||||| |||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  92001 tactccctccgtccctatatgtaagcaccttttgcatctaatagaagggtgctta 92055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 203745 - 203812
Alignment:
Q  230 tactctctccgtccctgtatgtaagcactctttgcatctaataaaagggtgcttagatatatggacgga 298  Q
    |||||||||||| ||||||||||| ||| ||||  ||||||||||||||| |||||| ||| |||||||    
T  203745 tactctctccgttcctgtatgtaatcac-ctttatatctaataaaagggtacttagacatagggacgga 203812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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