View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20144_low_2 (Length: 441)
Name: NF20144_low_2
Description: NF20144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20144_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 40570853 - 40571276
Alignment:
| Q |
1 |
ccatttggaaccaccaataattgttctctagacaacacatttctcattgattgcaacaaaacatcttcaacctcaacagacgtaccattcttgccacaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40570853 |
ccatttggaaccaccaataattgttctctagacaacacctttctcattgattgcaacaaaacatcttcaacctcaacagacgtaccattcttgccacaga |
40570952 |
T |
|
| Q |
101 |
ctaatcaaagtgttctaaacatctcacttgacggtgaactgcgtgctgcatggccagtagcaagtgattgctattcagaaaatggtacaaaattgagcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40570953 |
ctaatcaaagtgttctaaacatctcactcgacggtgaactgcgtgctgcatggccagtagcaagtgattgctattcagaaaatggtacaaaattgagcca |
40571052 |
T |
|
| Q |
201 |
aataattcaggatatcaacatgacacattttcacatctcgccaactaaaaacaagttgatagcagttggttgtgacacggtgggagtattagaagcagct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40571053 |
aataattcaggatatcaacatgacacattttcacatctcgccaactaaaaacaagttgatagcagttggttgtgacacggtgggagtattagaagcagct |
40571152 |
T |
|
| Q |
301 |
gattctgggcgaaaaacctacgccacaggatgtgttgcttactgcaacaatcgtactgatattgtcgccaatcaaccttgctctggtattggttgctgtg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40571153 |
gattctgggcgaaaaacctacgccacaggatgtgttgcttactgcaacaatcgtactgatattgtcgccaatcaaccttgctctggtattggttgctgtg |
40571252 |
T |
|
| Q |
401 |
agattcaattaccccaagttcaca |
424 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
40571253 |
agattcaattaccccaagttcaca |
40571276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 40577276 - 40577681
Alignment:
| Q |
1 |
ccatttggaaccaccaataattgttctctagacaacacatttctcattgattgcaacaaaacatcttcaacctcaacagacgtaccattcttgccacaga |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
40577276 |
ccatttggaaccaccaaggattgttctctagacaacacctttctcatcgattgcaacaaaacatcttcaacctcaacagaggtaccattcttgccacaga |
40577375 |
T |
|
| Q |
101 |
ctaatcaaagtgttctaaacatctcacttgacggtgaactgcgtgctgcatggccagtagcaagtgattgctattcagaaaatggtacaaaattgagcca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||| | | ||||||||||||||| || ||||||||||| ||||||| ||| || | | ||| |
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|
| T |
40577376 |
ctaatcaaagtgttctaaacatctcacttaatggtgaacttcacgttgcatggccagtagccagctattgctattcaaaaaatggcacacaagtaaacca |
40577475 |
T |
|
| Q |
201 |
aataattcaggatatcaacatgacacattttcacatctcgccaactaaaaacaagttgatagcagttggttgtgacacggtggga------gtattagaa |
294 |
Q |
| |
|
|| | ||||||| |||||| |||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||| | | | | | |
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|
| T |
40577476 |
aacatttcaggaaatcaacgtgacacattttcacatct---caactcaaaacaagtttatagcagttggttgtgacacggtgggaatactcgcagtcgga |
40577572 |
T |
|
| Q |
295 |
gcagctgattctgggcgaaaaacctacgccacaggatgtgttgcttactgcaacaatcgtactgatattgtcgccaatcaaccttgctctggtattggtt |
394 |
Q |
| |
|
| ||||||||||| | |||||||||||||||||||||||| |||| |||||||| | | |||||| | |||||||||||||||||||||||||||| |
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|
| T |
40577573 |
gaagctgattctgaggaaaaaacctacgccacaggatgtgtggctttctgcaacaggcttgatgatatcgaagccaatcaaccttgctctggtattggtt |
40577672 |
T |
|
| Q |
395 |
gctgtgaga |
403 |
Q |
| |
|
||||||||| |
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|
| T |
40577673 |
gctgtgaga |
40577681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 40566160 - 40566583
Alignment:
| Q |
1 |
ccatttggaaccaccaataattgttctctagacaacacatttctcattgattgcaacaaaacatcttcaac------ctcaacagacgtaccattcttgc |
94 |
Q |
| |
|
|||||||||||||| || |||||||| || ||||| || ||||||||| |||||||||||||||||||||| ||||||| | || || | |||| |
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|
| T |
40566160 |
ccatttggaaccactaagaattgttccctcgacaatacctttctcattaattgcaacaaaacatcttcaactccaacctcaacacatgttccctacttgg |
40566259 |
T |
|
| Q |
95 |
cacagactaatcaaagtgttctaaacatctcacttgacggtgaactgcgtgctgcatggccagtagcaagtgattgctattcagaaaatggtacaaaatt |
194 |
Q |
| |
|
||| |||||||| ||| ||||| |||||||| | |||||| ||| | ||||||||||||||| || |||||||| ||||||| || | | | |
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|
| T |
40566260 |
ataagagtaatcaaaatgtcctaaatatctcactcaatggtgaattgcacgttgcatggccagtagccagcgattgctacgcagaaaagggcagattcat |
40566359 |
T |
|
| Q |
195 |
gagccaaataattcaggatatcaacatgacacattttcacatctcgccaactaaaaacaagttgatagcagttggttgtgacacggtgggagtattagaa |
294 |
Q |
| |
|
||||| | | |||||| ||||||||||||||| |||||||||||||| ||||||||||| ||||||||| ||||||||| | |||| | | |
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|
| T |
40566360 |
ataccaaacgctgcgggatatgaacatgacacatttttacatctcgccaactcgaaacaagttgacagcagttggctgtgacacgattggagcactctcg |
40566459 |
T |
|
| Q |
295 |
gcagctgattctgggcgaaaaacctacgccacaggatgtgttgcttactgcaacaatcgtactgatattgtcgccaatcaaccttgctctggtattggtt |
394 |
Q |
| |
|
|| |||||||||| |||| | |||| ||||||||||||| |||| ||||||| | | ||||||| | |||| |||| ||||||| |||| ||||| |
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|
| T |
40566460 |
gcgattgattctgggggaaacaactacaccacaggatgtgtggctttatgcaacaggcttgatgatattatggccagtcaatcttgctcaggtactggtt |
40566559 |
T |
|
| Q |
395 |
gctgtgagattcaattaccccaag |
418 |
Q |
| |
|
| || |||||| | ||||||||| |
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|
| T |
40566560 |
gttgcgagatttcaataccccaag |
40566583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 40595756 - 40595823
Alignment:
| Q |
211 |
gatatcaacatgacacattttcacatctcgccaactaaaaacaagttgatagcagttggttgtgacac |
278 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||||||| |
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|
| T |
40595756 |
gatatcaagatgccacattttcacgtctcgccaactcaaaacaagttgatagcagttggatgtgacac |
40595823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 275
Target Start/End: Original strand, 40589340 - 40589416
Alignment:
| Q |
199 |
caaataattcaggatatcaacatgacacattttcacatctcgccaactaaaaacaagttgatagcagttggttgtga |
275 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||| |||| || ||| |||||||||| |||||||||| ||||| |
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|
| T |
40589340 |
caaacaattcagtttatcaacatgacacattttcacctctctcccactcgaaacaagttggtagcagttggctgtga |
40589416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 8490520 - 8490797
Alignment:
| Q |
1 |
ccatttggaaccaccaataattgttctctagacaacacatttctcattgattgcaacaaaacatcttcaacctcaacagacgtaccattcttgccacaga |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
8490520 |
ccatttggaaccaccaagagttgttctctagacaacacctttctcattgattgcaacaaaacgtcttcaacctcaacagacgtaccattcttgccacaga |
8490619 |
T |
|
| Q |
101 |
ctaatcaaagtgttctaaacatctcacttgacggtgaactgcgtgctgcatggccagtagcaagtgattgctattcagaaaatggtacaaaattgagcca |
200 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||| || |||||||||| ||| |||||||||||| | ||||| |||| | ||| ||| |
|
|
| T |
8490620 |
gtaatcaaagtgttctaaacatctcactcgatggtgaactgcatgttgcatggccaataggcagtgattgctatgctgaaaagggtaaactggtgaacca |
8490719 |
T |
|
| Q |
201 |
aataattcaggatatcaacatgacacattttcacatctcgccaactaaaaacaagttgatagcagttggttgtgacac |
278 |
Q |
| |
|
|| | || | ||||||||||||||| |||| ||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8490720 |
aacatatcctggcatcaacatgacacatcttcaaatctcaccaaccggaaacaagttgatagcagttggttgtgacac |
8490797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 64 - 173
Target Start/End: Complemental strand, 2017445 - 2017336
Alignment:
| Q |
64 |
tcttcaacctcaacagacgtaccattcttgccacagactaatcaaagtgttctaaacatctcacttgacggtgaactgcgtgctgcatggccagtagcaa |
163 |
Q |
| |
|
|||||||||||||| | |||| ||| ||||||| |||||||||| ||| ||||||||||| ||||| ||||||||||||| ||||||||||||||| | |
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|
| T |
2017445 |
tcttcaacctcaacccatatacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagcca |
2017346 |
T |
|
| Q |
164 |
gtgattgcta |
173 |
Q |
| |
|
| |||||||| |
|
|
| T |
2017345 |
gcgattgcta |
2017336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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