View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20145_high_14 (Length: 302)
Name: NF20145_high_14
Description: NF20145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20145_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 22 - 292
Target Start/End: Original strand, 49654517 - 49654787
Alignment:
| Q |
22 |
gagttcagcatctactggtgcacctgcagacactggagcagaattccagtgtccaggtcaggttgtggggcaagtgaatctcagccctacacgtcagcaa |
121 |
Q |
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| T |
49654517 |
gagttcagcatctaccggtgcacctgcacacactggagcagaattccagtgtccaggtcaggttgtggggcaagtgaatctcagccctacacgtcagcaa |
49654616 |
T |
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| Q |
122 |
tcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttact |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654617 |
tcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttact |
49654716 |
T |
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| Q |
222 |
atgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttg |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654717 |
atgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttg |
49654787 |
T |
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Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 121 - 292
Target Start/End: Original strand, 16486263 - 16486434
Alignment:
| Q |
121 |
atcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttac |
220 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
16486263 |
atcgtacatgttgtatgcagaaacatgttatcctcctttggtacaatatgtaacttacaacagattaggtcccattcgaacaatgggttgtccttcttac |
16486362 |
T |
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| Q |
221 |
tatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttg |
292 |
Q |
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| T |
16486363 |
tatgttccaccattaccctgcatgtgtacaggctttgatcgtgacccttatcagtttcaatctacacctttg |
16486434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 121 - 292
Target Start/End: Complemental strand, 21816647 - 21816476
Alignment:
| Q |
121 |
atcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttac |
220 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
21816647 |
atcgtacatgttgtatgcagaaacatgttatcctcctttggtacaatatgtaacttacaacagattaggtcccattcgaacaatgggttgtccttcttac |
21816548 |
T |
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| Q |
221 |
tatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttg |
292 |
Q |
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||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21816547 |
tatgttccaccattaccctgcatgtgtacaggctttgatcgtgacccttatcagtttcaatctacacctttg |
21816476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 123
Target Start/End: Complemental strand, 14381479 - 14381448
Alignment:
| Q |
92 |
caagtgaatctcagccctacacgtcagcaatc |
123 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
14381479 |
caagtgaatctcagccctacacgtcagcaatc |
14381448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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