View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20145_high_16 (Length: 254)
Name: NF20145_high_16
Description: NF20145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20145_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 49655069 - 49654859
Alignment:
| Q |
18 |
aggctattagaacatcatttacagtttagtccaaaatcaaaataagctaaagctatgagcagagcatttccagtgttaagactaagatcttctaaatgta |
117 |
Q |
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| T |
49655069 |
aggctattagaacatcatttacagtttagtccaaaatcaaaataagctaaagctatgagcagagcatttccagtgttaagactaagatcttctaaatgta |
49654970 |
T |
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| Q |
118 |
aaattagccccccgactaaactaaggacataaaccacatactataagctaaacttgtgtcaattacaaaattaccataacaaaactatcctataacagaa |
217 |
Q |
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| T |
49654969 |
aaattag--ccccgactaaactaaggacataaaccacatactataagctaaacttgtgtcaattacaaaattaccataacaaaactatcctataacagaa |
49654872 |
T |
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| Q |
218 |
caaacaaaatcag |
230 |
Q |
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||||||||||||| |
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| T |
49654871 |
caaacaaaatcag |
49654859 |
T |
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Back To:
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 8551505 - 8551537
Alignment:
| Q |
88 |
cagtgttaagactaagatcttctaaatgtaaaa |
120 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
8551505 |
cagtgtcaagactaagatcttctaaatgtaaaa |
8551537 |
T |
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