View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20145_high_2 (Length: 476)
Name: NF20145_high_2
Description: NF20145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20145_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 3717806 - 3718267
Alignment:
| Q |
1 |
catgtcttcccaaagttagctacaacttagccttttgaggagttacaatttacaacagtgatatgttacaaaatttgtgataatatacatatattttttc |
100 |
Q |
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| T |
3717806 |
catgtcttcccaaagttagctacaacttagccttttgaggagttacaatttacaacagtgatatgttacaaaatttgtgataatatacatatattttttc |
3717905 |
T |
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| Q |
101 |
tcacaaagaggatattacaatttcttgatttagtgcaagtgtggtctttcaattgaaaatgtttggcatgagtagcactctccttctttatcttgagaac |
200 |
Q |
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| T |
3717906 |
tcacaaagaggatattacaatttcttaatttagtgcaagtgtggtctttcaattgaaaatgtttggcatgagtagcactctccttctttatcttgagaac |
3718005 |
T |
|
| Q |
201 |
atatattcatattgatattgacttcaaaagtgatttgatatttctctctttctttttgagcactcatgaatatacttttatgttctaccattgcaagttg |
300 |
Q |
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| T |
3718006 |
atatattgatattgatattgacttcaaaagtgatttggtatttctctctttctttttgagcactcatgaatatacttttatgttctaccattgcaagttg |
3718105 |
T |
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| Q |
301 |
caacacatatttccttgatgttgtaatcgttgcaatgttttcctttttatggatatttgagcctttgacaaaatgtatcatattcccttagcttgattga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3718106 |
caacacatatttccttgatgttgtaatcgttgcaatgttttcctttttatggatatttgagcctttgacaaaatgtatcatattcccttagc----ttga |
3718201 |
T |
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| Q |
401 |
atcaaaacttattttcattcatgtaagggattttgacatcctgaataatagtttgcttagtctgtg |
466 |
Q |
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| T |
3718202 |
atcaaaagttattttcattcatgtaagggattttgacatcctgaataatagcttgcttagtctgtg |
3718267 |
T |
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