View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20145_high_6 (Length: 397)
Name: NF20145_high_6
Description: NF20145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20145_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 22 - 392
Target Start/End: Complemental strand, 1438908 - 1438538
Alignment:
| Q |
22 |
caggagtggttgcactgttgtatgtttagcattgatactggttgtatttgcgattgtaaaagatctgataacttttgattgctttacaaccaattaggag |
121 |
Q |
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| T |
1438908 |
caggagtggttgcactgttgtatgtttagcattgatactggttgtatttgcgattgtaaaagatctgataacttttgattgctttacaaccaattaggag |
1438809 |
T |
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| Q |
122 |
acttggaaaaagttttgcaggaatggggtcaaggaactgtgacatgtataagatctgaagggttgctttgtatgtaattttagattacgacgattgattg |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1438808 |
acttggaaaaagttttgcaggaatggggtcaaggaactgtgacatgtataagatctgaagggttgctttgtatgtaattttagattgcgacgattgattg |
1438709 |
T |
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| Q |
222 |
aaattcaatattaataacatgtcaagatctattaagtttcctggatgatttcagttttatagttgaactttgtggtgccaactttgaccaatatctgaat |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1438708 |
aaattcaatattaataacatgtcaagatctattaagtttccttgatgatttcagtgttatagttgaactttgtggtgccaactttgaccaatatctgaat |
1438609 |
T |
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| Q |
322 |
tagatttttattttctactttattcatcatgtagatctgtaagttacatgtctttttcagttcatctcact |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1438608 |
tagatttttattttctactttattcatcatgtagatctgtaagttacatgtctttttcagttcatatcact |
1438538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 145 - 254
Target Start/End: Original strand, 1451381 - 1451490
Alignment:
| Q |
145 |
tggggtcaaggaactgtgacatgtataagatctgaagggttgctttgtatgtaattttagattacgacgattgattgaaattcaatattaataacatgtc |
244 |
Q |
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|||| |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| || || |||| |||||||||| |||||||||||| ||| |
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| T |
1451381 |
tgggatcaagggactgtgacatgtataagagctgaagggttgctctgtatgtaattttagaatatgatgattaattgaaattcgatattaataacaagtc |
1451480 |
T |
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| Q |
245 |
aagatctatt |
254 |
Q |
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| T |
1451481 |
aagatctatt |
1451490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 1451243 - 1451364
Alignment:
| Q |
22 |
caggagtggttgcactgttgtatgtttagcattgatactggttgtat--ttgcgattgtaaaagatctgataacttttgattgctttacaaccaattagg |
119 |
Q |
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||||| |||||||||||||||||| |||||||||||| ||| ||||| |||| |||| ||||||||| | |||||| |||| |||| ||||| | |
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| T |
1451243 |
caggattggttgcactgttgtatg-ttagcattgatattggctgtattgttgctattgcaaaagatctcaaggcttttgtttgcattactgccaatgacc |
1451341 |
T |
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| Q |
120 |
agacttggaaaaagttttgcagg |
142 |
Q |
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|||| | |||||||||||||||| |
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| T |
1451342 |
agacatagaaaaagttttgcagg |
1451364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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