View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20145_high_7 (Length: 386)
Name: NF20145_high_7
Description: NF20145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20145_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 32605556 - 32605185
Alignment:
| Q |
1 |
cctcactttaacattgattctataatatcaaccgatttgaagtggaccaagatcgacggtcggagttgtagtgaaacgatgaaggatggtggcatcccct |
100 |
Q |
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| T |
32605556 |
cctcactttaacattgattctataatatcaaccgatttgaagtggaccaagatcgacggtcggagttgtagtgacacgatgaaggatggtggcatcccct |
32605457 |
T |
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| Q |
101 |
tgatagggatggtgtacatgcaaacacttagataatcagttgttttttgtgattagaaaattgtgtacctttatccacactatacaatgaaaatggatta |
200 |
Q |
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||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32605456 |
tgataagaatggtgtacatgcaaacacttagataatcagttgttttttgtgattagaaaattgtgtacctttatccacactacacaatgaaaatggatta |
32605357 |
T |
|
| Q |
201 |
gtcattgagttgtattcggtataatttgcagattaacatttcatttccatcatgtgatgccagtgagatcaccaaatttactatggtgtgccgtcagtgc |
300 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32605356 |
gtcattgagttgtattcggtataatttgcaaattaacatttcatttccatcatgtgatgccagtgagatcatcaaatttactatggtgtgccgtcagtgc |
32605257 |
T |
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| Q |
301 |
aacttcataacgtgttcctttgtgatctaatccgtagttgattgggtttaaatccattccataacacaaaca |
372 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
32605256 |
aacttcatattgtgttcctttgtgatctaatctgtagttgattgggtttaaatccattccaaaacacaaaca |
32605185 |
T |
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