View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20145_low_11 (Length: 333)
Name: NF20145_low_11
Description: NF20145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20145_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 15 - 314
Target Start/End: Original strand, 41941340 - 41941640
Alignment:
| Q |
15 |
cataggttctactggatatgatgtaacaaaaaaccgatatgaaaagatcatgttcctattaattaaggtatactagtgctagtgagattgtacttatact |
114 |
Q |
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| T |
41941340 |
cataggttctactggatatgatgtaacaaaaaaccgatatgaaaagatcatgttcctattaattaaggtatactagtgctagtgagattgtacttatact |
41941439 |
T |
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| Q |
115 |
taattccaattgcagagaaactcacgtgcatgtttaaactttaaaataaaa-gctctatgatttttggtaagaagtttcaaaagttaccaaagttggctg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41941440 |
taattccaattgcagagaaactcacgtgcatgtttaaactttaaaataaaaggctctatgatttttggtaagaagtttcaaaagttaccaaagttggctg |
41941539 |
T |
|
| Q |
214 |
atccaacaatgttcatgtacaaagtttacatttgcaataacaagtgaaagtgtgcagtaatattttataaagagaaaaatgaatatgaaaattgtagcta |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41941540 |
atccaacaatgttcatgtacaaagtttacatttgcaataacaagtgaaagtgtgcagtaatattttataaagagaaaaatgaatatgaaaattgtagcta |
41941639 |
T |
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| Q |
314 |
g |
314 |
Q |
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| T |
41941640 |
g |
41941640 |
T |
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