View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20145_low_12 (Length: 319)
Name: NF20145_low_12
Description: NF20145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20145_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 303
Target Start/End: Original strand, 1555959 - 1556261
Alignment:
| Q |
8 |
gagcagagacgtaacctcaaccatgagaataccaggcatgataggtctttcaggaaaatgaccgggaaagaaattgtcattgattgtaacattctttata |
107 |
Q |
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| T |
1555959 |
gagcagagtcgtaacctcaaccatgagaacaccaggcatgataggtctttcaggaaaatgaccaggaaagaaattgtcattgattgtaacattctttata |
1556058 |
T |
|
| Q |
108 |
gctacggcagaaactccaggattgtattcaatcactctatctaccaataaaaaaggaaacctgaaacaagaaacaaggtgaagagtttgcttgttgattc |
207 |
Q |
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| T |
1556059 |
gcaacggcagaaactccaggattgtattcaatcactctatctaccaataaaaaaggaaacctgaaacaagaaacaaggtgaagagtttgcttgttgattc |
1556158 |
T |
|
| Q |
208 |
acaaaacaaaatcacaaatgtctattgagttgaattgagtt-------aggcaaaatttcaagaatctgattgatatccatgacttttggaaatgcagga |
300 |
Q |
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||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1556159 |
acaaaacaaaatcacaaatgtctattgagttgagttagcttacctatgaggcaaaatttcaagaatctgattgatatccatgacttttggaaatgcagga |
1556258 |
T |
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| Q |
301 |
tac |
303 |
Q |
| |
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||| |
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| T |
1556259 |
tac |
1556261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 37573808 - 37573681
Alignment:
| Q |
21 |
acctcaaccatgagaataccaggcatgataggtctttcaggaaaatgaccgggaaagaaattgtcattgattgtaacattctttatagctacggcagaaa |
120 |
Q |
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||||||||||| |||| ||||||||||||||||||||| |||||||| || |||||||| || ||||| ||||| |||||||||||||| || ||||||| |
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| T |
37573808 |
acctcaaccattagaacaccaggcatgataggtctttctggaaaatgtccaggaaagaagttatcatttattgttacattctttatagccactgcagaaa |
37573709 |
T |
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| Q |
121 |
ctccaggattgtattcaatcactctatc |
148 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
37573708 |
ctccaggattgtattcaatcactctatc |
37573681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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