View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20145_low_5 (Length: 406)
Name: NF20145_low_5
Description: NF20145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20145_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 16918026 - 16917649
Alignment:
| Q |
19 |
caaaccaaattgaaaacaaca---ggaatccaataaaatcctctacgactccaaacaaacgagagaggatttaaccatcaatgatttaaatcaaatccaa |
115 |
Q |
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| T |
16918026 |
caaaccaaattgaaaacaacaacaggaatccaataaaatcctctacaactccaaacaaacgagataggatttaaccatcaatgatttaaatcaaatccaa |
16917927 |
T |
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| Q |
116 |
aatattttgcaatgatttgaatcatatacatgttcatcactcatggctcatcatcaacctccatgtccgattcactgtctgaatcgctatactcttcttc |
215 |
Q |
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| T |
16917926 |
aatattttgcaatgatttgaatcatatacatgttcatcactcatggctcatca---acctccatgtccaattcactgtctgaatcgctatactcttcttc |
16917830 |
T |
|
| Q |
216 |
tgcacataacaattcaatgtgttagaaaacatcaagaattttatgagaatactggctttaggagaaaaggtaagttatttactaaattacagaaaaatct |
315 |
Q |
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| T |
16917829 |
tgcacataacaattcaatgtgttagaaaacatcaggaattttatgagaatactggctttagtaaaaaacgtaacttatttactaaattacggaaaaatct |
16917730 |
T |
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| Q |
316 |
ttaaattaccgttaattggatccacaaaatctggtttaa---taggaatatgagctatcttataccaatcgtcaccggttc |
393 |
Q |
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| T |
16917729 |
taaaattaccgttaattcgatgcacaaaatctgattcaaaattaggaacatgagctatcttataccaatcttcacctgttc |
16917649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 348
Target Start/End: Complemental strand, 16912852 - 16912523
Alignment:
| Q |
19 |
caaaccaaattgaaaacaaca---ggaatccaataaaatcctctacgactccaaacaaacgagagaggatttaaccatcaatgatttaaatcaaatccaa |
115 |
Q |
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| T |
16912852 |
caaaccaaattgaaaacaacaacaggaatccaataaaatcctctacaactccaaacaaacgagagaggatttaaccatcaatgatttaaatcaaatccaa |
16912753 |
T |
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| Q |
116 |
aatattttgcaatgatttgaatcatatacatgttcatcactcatggctcatcatcaacctccatgtccgattcactgtctgaatcgctatactcttcttc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||| ||||||||||||||| |
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| T |
16912752 |
aatattttgcaatgatttgaatcatatacatgttcatcactcatggctcatca---acctccatgtccaattcattgtctgaattgctatactcttcttc |
16912656 |
T |
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| Q |
216 |
tgcacataacaattcaatgtgttagaaaacatcaagaattttatgagaatactggctttaggagaaaaggtaagttatttactaaattacagaaaaatct |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| ||||||||||||||| || ||||||| |
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| T |
16912655 |
tgcacataacaattcaatgtgttagaaaacatcaagaattttatgagaatactggctttagtaaaaaacgtaacttatttactaaattatagcaaaatct |
16912556 |
T |
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| Q |
316 |
ttaaattaccgttaattggatccacaaaatctg |
348 |
Q |
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| T |
16912555 |
ttaaattaccgttaattggatgcacaacatctg |
16912523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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