View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20145_low_8 (Length: 355)
Name: NF20145_low_8
Description: NF20145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20145_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 3717744 - 3717406
Alignment:
| Q |
1 |
tgtaatgggttcaaattatagtgggtaaagtcttcaaggatatcgcggcaaaattaaaggggacaactttagatagttgtcaagtttaaagtgaaccatt |
100 |
Q |
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| T |
3717744 |
tgtaatgggttcaaattatagtgggtaaagtcttcaaggatatcgcggcaaaattaaaggggacaactttagatagttgtcaagtttaaagtgaaccatt |
3717645 |
T |
|
| Q |
101 |
ataagatcatttgtgtcgttttatttctttgttcacatttctcttagaatatattttattttaactaaatatgttttcatagaacacggaaataatttca |
200 |
Q |
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| T |
3717644 |
ataagatcatttgtgtctttttatttctttgttcacatttctcttagaagatgttttattttaactaaatatgttttcatagaacacggaaaaaatttca |
3717545 |
T |
|
| Q |
201 |
aatacaccacaattaaatcctccttttgtgattttctcatcttcaacaacaagtttaaacgactacttgaagcgaatcaattatacaacaaattttgtcg |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3717544 |
aatacaccacaattaaattctccttttgtgattttctcatcttcaacaacaaatttaaacgactacttgaagcgaatcaattatacaacaaattttgtcg |
3717445 |
T |
|
| Q |
301 |
gatctttatccaactttacatgttcaaccacatacatac |
339 |
Q |
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||| ||||||||||||||||||||||||||| ||||||| |
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| T |
3717444 |
gatgtttatccaactttacatgttcaaccacttacatac |
3717406 |
T |
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