View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20145_low_9 (Length: 339)
Name: NF20145_low_9
Description: NF20145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20145_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 8296068 - 8295766
Alignment:
| Q |
19 |
aatttcatacaaaaattggaatagaattatacacaggttgatttagnnnnnnnnnn-gaaagacacaagttgattcaattgttaaataagttgatttata |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||| || ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8296068 |
aatttcatacaaaatttggaatagaattatacacag-ttgattcagttttttcttttgaaggacacaagttgattcaattgttaaataagttgatttata |
8295970 |
T |
|
| Q |
118 |
ttccataaggtgtgtgttctactctttcatcctatatcannnnnnnaggggaagcgacttaattcatatcattgataataagagtactaatacaattgag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8295969 |
ttccataaggtgtgtgttctactctttcatcctgtatcatttttttaggggaagcgacttaattcatatcattgataatgagagtactaatacaattgag |
8295870 |
T |
|
| Q |
218 |
tacataagtggaaaccagctaaaaatgtgcctgtctttactaaggcatgggcaaactcattgacttgtcttcattgaaactaactcaacacaagaatagg |
317 |
Q |
| |
|
|||||||||||||||| |||| | ||||| ||||||||||||||||||| |||| | ||||| ||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
8295869 |
tacataagtggaaacccgctagagatgtggctgtctttactaaggcatgagcaaccacattggcttgtgttcattcaaactaactcaacacaagaatagg |
8295770 |
T |
|
| Q |
318 |
gaaa |
321 |
Q |
| |
|
|||| |
|
|
| T |
8295769 |
gaaa |
8295766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 28646683 - 28646729
Alignment:
| Q |
176 |
ttaattcatatcattgataataagagtactaatacaattgagtacat |
222 |
Q |
| |
|
||||||||| ||||| ||||||| ||| ||||||||||||||||||| |
|
|
| T |
28646683 |
ttaattcatttcattaataataatagttctaatacaattgagtacat |
28646729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University