View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20146_high_1 (Length: 767)

Name: NF20146_high_1
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20146_high_1
NF20146_high_1
[»] chr8 (17 HSPs)
chr8 (254-751)||(429538-430041)
chr8 (42-116)||(429339-429413)
chr8 (471-620)||(20694415-20694564)
chr8 (464-616)||(40737822-40737974)
chr8 (478-577)||(30542500-30542599)
chr8 (471-620)||(1784085-1784234)
chr8 (477-602)||(9428063-9428187)
chr8 (497-612)||(8168928-8169042)
chr8 (481-586)||(24185536-24185642)
chr8 (557-620)||(40737903-40737966)
chr8 (465-538)||(44329146-44329219)
chr8 (184-215)||(429481-429512)
chr8 (557-620)||(20694500-20694563)
chr8 (565-614)||(4102008-4102057)
chr8 (478-602)||(27988081-27988206)
chr8 (478-602)||(28045383-28045508)
chr8 (509-574)||(39282128-39282193)
[»] chr3 (12 HSPs)
chr3 (481-616)||(29212843-29212978)
chr3 (471-620)||(19790718-19790867)
chr3 (471-620)||(1779489-1779637)
chr3 (472-574)||(31836453-31836555)
chr3 (518-614)||(18093780-18093876)
chr3 (481-620)||(55121179-55121318)
chr3 (530-620)||(16867614-16867704)
chr3 (481-535)||(18093783-18093837)
chr3 (470-524)||(19790815-19790869)
chr3 (557-602)||(30122036-30122081)
chr3 (470-602)||(37914524-37914654)
chr3 (566-619)||(40793569-40793622)
[»] chr4 (7 HSPs)
chr4 (471-620)||(38562121-38562270)
chr4 (557-620)||(44626478-44626541)
chr4 (515-607)||(2181641-2181733)
chr4 (482-615)||(20291788-20291921)
chr4 (471-548)||(52840263-52840340)
chr4 (471-535)||(38562207-38562271)
chr4 (557-620)||(38562122-38562185)
[»] chr5 (15 HSPs)
chr5 (471-586)||(32522558-32522673)
chr5 (483-620)||(28499778-28499914)
chr5 (476-564)||(38699046-38699134)
chr5 (507-614)||(14509852-14509959)
chr5 (507-602)||(20269473-20269568)
chr5 (470-620)||(14751123-14751271)
chr5 (471-608)||(14974868-14975005)
chr5 (565-620)||(11089285-11089340)
chr5 (482-548)||(6241367-6241433)
chr5 (481-535)||(14509902-14509956)
chr5 (482-535)||(8567957-8568010)
chr5 (565-620)||(5865930-5865985)
chr5 (557-616)||(28351025-28351084)
chr5 (483-537)||(20269521-20269575)
chr5 (567-620)||(14751216-14751269)
[»] chr7 (4 HSPs)
chr7 (497-601)||(15996137-15996241)
chr7 (515-601)||(14574997-14575083)
chr7 (481-620)||(2399705-2399844)
chr7 (481-574)||(21955377-21955470)
[»] scaffold0777 (1 HSPs)
scaffold0777 (507-620)||(4743-4856)
[»] chr6 (10 HSPs)
chr6 (469-620)||(862818-862968)
chr6 (515-626)||(16260662-16260772)
chr6 (557-620)||(862903-862965)
chr6 (471-586)||(26296203-26296319)
chr6 (497-595)||(8050999-8051097)
chr6 (527-620)||(5069936-5070029)
chr6 (507-563)||(20890169-20890225)
chr6 (471-616)||(24252885-24253026)
chr6 (471-545)||(3846426-3846500)
chr6 (566-615)||(674140-674189)
[»] chr1 (18 HSPs)
chr1 (471-620)||(24419529-24419678)
chr1 (474-620)||(35489195-35489341)
chr1 (471-585)||(49166639-49166753)
chr1 (482-616)||(5700032-5700168)
chr1 (515-609)||(11900867-11900961)
chr1 (526-616)||(36618858-36618948)
chr1 (481-585)||(8900799-8900903)
chr1 (557-620)||(25395998-25396061)
chr1 (485-616)||(47084564-47084695)
chr1 (526-620)||(5368824-5368918)
chr1 (497-611)||(37247593-37247707)
chr1 (566-619)||(34890183-34890236)
chr1 (507-620)||(34890217-34890330)
chr1 (557-618)||(35489195-35489256)
chr1 (557-620)||(24419614-24419677)
chr1 (557-620)||(49166689-49166752)
chr1 (470-536)||(36618888-36618954)
chr1 (557-602)||(1609978-1610023)
[»] chr2 (9 HSPs)
chr2 (482-616)||(32516134-32516268)
chr2 (481-585)||(33956317-33956421)
chr2 (558-620)||(11564997-11565059)
chr2 (471-611)||(11564996-11565137)
chr2 (526-618)||(27279485-27279577)
chr2 (471-535)||(41517445-41517509)
chr2 (477-535)||(14725292-14725350)
chr2 (579-620)||(9733475-9733516)
chr2 (507-548)||(43336543-43336584)


Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 254 - 751
Target Start/End: Original strand, 429538 - 430041
Alignment:
Q  254 aattattacaagtagcacctcattgtgtgaatatgtataaacactacagtatttttcttttgtt------aatccccaattcttttaagaaaaatagatt 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||  ||||||||||||||    
T  429538 aattattacaagtagcacctcattgtgtgaatatgtataaacactacagtatttttcttttgttgttgttaatccccaattctta-aagaaaaatagatt 429636  T
Q  348 tagtcttctgatagtaagaaaataataaagttatcaagaaatatagatttgatcttgtgatcatataagaatatcttaaacttaaaattttgaattaagt 447  Q
    | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||    
T  429637 tggtcttgtgatagtaagaaaataataaagttatcaagaaatatagatttgatcttgtgatgatataagaatatctcaaacttaaaattttgaatgaagt 429736  T
Q  448 tactttttaaaatttataatgag-tactccctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataa 546  Q
    ||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  429737 tactttttaaaatttataatgaggtactccttctggtcatatttattaataaaaaatagtttttaaaatacattgaattattaatatatttgacctataa 429836  T
Q  547 atataactgaatacattgattattcaatatatctaaaaaagtgttttttgcttatatatatgaccggagggagttatattgttacattataattttttgc 646  Q
    || | ||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||  ||||||| |  ||||||||||||||||||||||||    
T  429837 atgtgactgaatacattgattattcaatgtatctaaaaaagtattttttgcttatatatgtgattggagggaatagtattgttacattataattttttgc 429936  T
Q  647 aggcgatattgtttttattcgcttttgcgattcatcacatctttcactttttcctctcctttgctgggcattcccaaatagccacaatcattttgacata 746  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  429937 aggcgatattgtttttattcgcttttgtgattcatcacatctttcactttttcctctcctttactgggcattcccaaatagccacaatcattttgacata 430036  T
Q  747 atagg 751  Q
    |||||    
T  430037 atagg 430041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 429339 - 429413
Alignment:
Q  42 gtggagctcctctctcaaatgattaaacattttttacggtataataatgtatataaatttgtgatacaagtgacc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  429339 gtggagctcctctctcaaatgattaaacattttttacggtataataatgtatacaaatttgtgatacaagtgacc 429413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 471 - 620
Target Start/End: Complemental strand, 20694564 - 20694415
Alignment:
Q  471 tactccctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattatt 570  Q
    ||||||||| |||||||||||| | ||||||||| ||||||| |||||||||||  | ||||||| | |||||||||| | |||  ||| ||| ||||||    
T  20694564 tactccctccggtcacatttataactaaaaaataattttttagatacattgaatagtcaatgtatctaacctataaatgtgacttgataaattaattatt 20694465  T
Q  571 caatatatctaaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    |||| ||||||||||  || |||||| ||||| || | ||||||||||||    
T  20694464 caatgtatctaaaaagttgatttttgtttataaatgtaaccggagggagt 20694415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 464 - 616
Target Start/End: Complemental strand, 40737974 - 40737822
Alignment:
Q  464 taatgagtactccctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacatt 563  Q
    |||| |||||||||||  |||| |||||| |  ||||||||||||||||  |||||||||| |||||||||| |||||| ||||| | || | |||||||    
T  40737974 taattagtactccctccagtcatatttataagcaaaaaatagttttttaggtacattgaataattaatgtatctgacct-taaatgtgaccggatacatt 40737876  T
Q  564 gattattcaatatatctaaaaaag-tgttttttgcttatatatatgaccggagg 616  Q
     |||||||||| |||| ||||||| || ||||  |||||| ||||||| |||||    
T  40737875 aattattcaatgtatcaaaaaaagttggttttctcttataaatatgactggagg 40737822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 478 - 577
Target Start/End: Complemental strand, 30542599 - 30542500
Alignment:
Q  478 tctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatata 577  Q
    |||||||| |||||| ||||||||| | |||||||| |||||||||| |||||| ||||| |||| ||||| ||||  |||| ||| |||||||||||||    
T  30542599 tctggtcatatttataaataaaaaacaattttttaagtacattgaataattaatatatttaacctttaaatgtaaccaaatatattaattattcaatata 30542500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 471 - 620
Target Start/End: Complemental strand, 1784234 - 1784085
Alignment:
Q  471 tactccctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattatt 570  Q
    |||| ||||||||||||||||| |  |||||| |  |||||| ||||||  ||| |||||||||| | ||| |||||||| || | ||||||| | ||||    
T  1784234 tacttcctctggtcacatttataagcaaaaaacaactttttagatacatctaataattaatgtatctaacccataaatatgaccggatacattaaatatt 1784135  T
Q  571 caatatatctaaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    |||| |||||||||||   ||||||| ||||| || |||||||| |||||    
T  1784134 caatgtatctaaaaaatcattttttgtttataaatgtgaccggatggagt 1784085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 477 - 602
Target Start/End: Original strand, 9428063 - 9428187
Alignment:
Q  477 ctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatat 576  Q
    ||||| |||||||||| ||||||||||| ||||||||||||||||||| |||||  ||| | || ||||||| | ||| |||||||| |||||| ||| |    
T  9428063 ctctgatcacatttataaataaaaaataattttttaaatacattgaataattaa-atatataacttataaatgtgactaaatacattaattattaaatgt 9428161  T
Q  577 atctaaaaaagtgttttttgcttata 602  Q
    |  ||||||| | |||||| ||||||    
T  9428162 acttaaaaaaatatttttttcttata 9428187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 497 - 612
Target Start/End: Original strand, 8168928 - 8169042
Alignment:
Q  497 aaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatatatctaaaaaagtgttttttg 596  Q
    |||||| |||||||||  |||||||||| |||||||||| ||| |||||||| | | || ||| ||| || ||||||| ||| ||||||| |||||||||    
T  8168928 aaaaaacagttttttatgtacattgaataattaatgtatctgatctataaatgtgattgcatatattaatcattcaatgtatataaaaaa-tgttttttg 8169026  T
Q  597 cttatatatatgaccg 612  Q
    |||||| || ||||||    
T  8169027 cttataaatgtgaccg 8169042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 481 - 586
Target Start/End: Original strand, 24185536 - 24185642
Alignment:
Q  481 ggtcacatttattaataaaaaat-agttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatatatc 579  Q
    |||||||||||| |  ||||||| | ||||||| ||||||||||| |||||| ||| | |||||||||| | |||| ||||||| |||||||||| || |    
T  24185536 ggtcacatttataagcaaaaaatgatttttttagatacattgaataattaatatatctaacctataaatgtgactggatacattaattattcaatgtacc 24185635  T
Q  580 taaaaaa 586  Q
    |||||||    
T  24185636 taaaaaa 24185642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 557 - 620
Target Start/End: Original strand, 40737903 - 40737966
Alignment:
Q  557 atacattgattattcaatatatctaaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    ||||||| |||||||||| || |||||||| | ||||||||||||| ||||||| |||||||||    
T  40737903 atacattaattattcaatgtacctaaaaaactattttttgcttataaatatgactggagggagt 40737966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 465 - 538
Target Start/End: Original strand, 44329146 - 44329219
Alignment:
Q  465 aatgagtactccctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttg 538  Q
    ||||| |||||||||  |||||| |||| |  |||||||  ||||||||||||||||||| |||||||||||||    
T  44329146 aatgaatactccctccagtcacaattataagcaaaaaatgattttttaaatacattgaataattaatgtatttg 44329219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 215
Target Start/End: Original strand, 429481 - 429512
Alignment:
Q  184 gagatagtcaactttatagtagtaagacacac 215  Q
    ||||||||||||||||||||||||||||||||    
T  429481 gagatagtcaactttatagtagtaagacacac 429512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 620
Target Start/End: Original strand, 20694500 - 20694563
Alignment:
Q  557 atacattgattattcaatatatctaaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    ||||||||| |||||||| ||||||||||| | ||||||  ||||| || ||||||||||||||    
T  20694500 atacattgactattcaatgtatctaaaaaattattttttagttataaatgtgaccggagggagt 20694563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 565 - 614
Target Start/End: Original strand, 4102008 - 4102057
Alignment:
Q  565 attattcaatatatctaaaaaagtgttttttgcttatatatatgaccgga 614  Q
    ||||||||||  |||||||||| ||||||||| ||||| |||||||||||    
T  4102008 attattcaatgaatctaaaaaattgttttttgtttataaatatgaccgga 4102057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 602
Target Start/End: Original strand, 27988081 - 27988206
Alignment:
Q  478 tctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatata 577  Q
    ||||||||||||||| |  |||||| |  ||||||| | |||||||| | |||||||| |    ||||||| ||||| |||||||| ||||||||||  |    
T  27988081 tctggtcacatttataagcaaaaaacaactttttaagttcattgaataagtaatgtatctcgtttataaatttaactaaatacattaattattcaatgaa 27988180  T
Q  578 tctaaaaaagtgtt-ttttgcttata 602  Q
    ||||||||  |||| |||||||||||    
T  27988181 tctaaaaagttgttgttttgcttata 27988206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 602
Target Start/End: Original strand, 28045383 - 28045508
Alignment:
Q  478 tctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatata 577  Q
    ||||||||||||||| |  |||||| |  ||||||| | |||||||| | |||||||| |    ||||||| ||||| |||||||| ||||||||||  |    
T  28045383 tctggtcacatttataagcaaaaaacaactttttaagttcattgaataagtaatgtatctcgtttataaatttaactaaatacattaattattcaatgaa 28045482  T
Q  578 tctaaaaaagtgtt-ttttgcttata 602  Q
    ||||||||  |||| |||||||||||    
T  28045483 tctaaaaagttgttgttttgcttata 28045508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 574
Target Start/End: Complemental strand, 39282193 - 39282128
Alignment:
Q  509 tttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaat 574  Q
    |||||||||||||||| ||||| |||||||| |||||| ||| |  |||||||||  |||||||||    
T  39282193 tttaaatacattgaataattaacgtatttgagctataattatgatcgaatacattatttattcaat 39282128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 6e-30; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 481 - 616
Target Start/End: Complemental strand, 29212978 - 29212843
Alignment:
Q  481 ggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatatatct 580  Q
    |||||||||||| |  ||||||  ||||||||  |||||||||| |||||||||| |||||||||||| | |||| ||||||||||||||||||||||||    
T  29212978 ggtcacatttataagcaaaaaactgttttttaggtacattgaataattaatgtatctgacctataaatgtgactggatacattgattattcaatatatct 29212879  T
Q  581 aaaaaagtgttttttgcttatatatatgaccggagg 616  Q
    |||||| |||||||| |||||| || ||||| ||||    
T  29212878 aaaaaaatgttttttacttataaatgtgaccagagg 29212843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 471 - 620
Target Start/End: Original strand, 19790718 - 19790867
Alignment:
Q  471 tactccctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattatt 570  Q
    |||| |||| |||||||||||| |  ||||| ||||||||||  |||||||||| |||||||||  | |||||||||| | | || ||||||  | ||||    
T  19790718 tacttcctccggtcacatttataagcaaaaagtagttttttaggtacattgaataattaatgtaccttacctataaatgtgattgcatacatcaagtatt 19790817  T
Q  571 caatatatctaaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    |||| |||||||||||||||||||| |||||| || ||||||||||||||    
T  19790818 caatgtatctaaaaaagtgttttttacttataaatgtgaccggagggagt 19790867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 471 - 620
Target Start/End: Original strand, 1779489 - 1779637
Alignment:
Q  471 tactccctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattatt 570  Q
    ||||||||| |||||||||||| || |||| |||  ||||||  |||||||||| ||| ||||||||||||| ||||| | ||   ||  ||| ||||||    
T  1779489 tactccctccggtcacatttataaacaaaacataactttttaggtacattgaataattgatgtatttgacct-taaatgtgaccttattgattaattatt 1779587  T
Q  571 caatatatctaaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    |||| ||||||||||  || |||||| |||||||| ||| ||||||||||    
T  1779588 caatgtatctaaaaagttggtttttgtttatatatgtgatcggagggagt 1779637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 472 - 574
Target Start/End: Complemental strand, 31836555 - 31836453
Alignment:
Q  472 actccctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattc 571  Q
    ||||||||||||||||||||| | ||||  | |  ||||||  | |||||||| |||||||||||||  |||||||||| ||| |||||||| |||||||    
T  31836555 actccctctggtcacatttataagtaaatgacaactttttaggttcattgaataattaatgtatttggtctataaatatgactaaatacattaattattc 31836456  T
Q  572 aat 574  Q
    |||    
T  31836455 aat 31836453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 518 - 614
Target Start/End: Complemental strand, 18093876 - 18093780
Alignment:
Q  518 attgaattattaatgtatttgacctataaatataactgaatacattgattattcaatatatctaaaaaagtgttttttgcttatatatatgaccgga 614  Q
    ||||||| |||||||||| |||||||||||| | ||   ||||||| |||||||||| ||| ||||||  ||||||||| ||||| || ||||||||    
T  18093876 attgaataattaatgtatctgacctataaatgtgacaagatacattaattattcaatgtatttaaaaatttgttttttgtttataaatgtgaccgga 18093780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 481 - 620
Target Start/End: Original strand, 55121179 - 55121318
Alignment:
Q  481 ggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatatatct 580  Q
    |||||||||||| || |||||| | |||||||  | |||||||| | |||||||||||   ||||||| | ||  |||||||| |||||| |||| ||||    
T  55121179 ggtcacatttataaacaaaaaacaattttttaggttcattgaataactaatgtatttggtttataaatgtgaccaaatacattaattatttaataaatct 55121278  T
Q  581 aaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    |||||  | ||||||||||||| || |||| ||| |||||    
T  55121279 aaaaagttattttttgcttataaatgtgactggaaggagt 55121318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 530 - 620
Target Start/End: Complemental strand, 16867704 - 16867614
Alignment:
Q  530 atgtatttgacctataaatataactgaatacattgattattcaatatatctaaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    |||||| | ||| |||||||| || |||| ||||  ||||||||| || |||||||  ||||||||||||||| || ||||| ||||||||    
T  16867704 atgtatctaacccataaatatgaccgaatgcattagttattcaatgtacctaaaaagttgttttttgcttataaatgtgaccagagggagt 16867614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 481 - 535
Target Start/End: Original strand, 18093783 - 18093837
Alignment:
Q  481 ggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtat 535  Q
    |||||||||||| || |||||| |  |||||||||||||||||| ||||||||||    
T  18093783 ggtcacatttataaacaaaaaacaaatttttaaatacattgaataattaatgtat 18093837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 470 - 524
Target Start/End: Complemental strand, 19790869 - 19790815
Alignment:
Q  470 gtactccctctggtcacatttattaataaaaaatagttttttaaatacattgaat 524  Q
    |||||||||| |||||||||||| | ||||||| | ||||||| |||||||||||    
T  19790869 gtactccctccggtcacatttataagtaaaaaacacttttttagatacattgaat 19790815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 602
Target Start/End: Original strand, 30122036 - 30122081
Alignment:
Q  557 atacattgattattcaatatatctaaaaaagtgttttttgcttata 602  Q
    ||||||| ||||||||||||| |||||||| | |||||||||||||    
T  30122036 atacattaattattcaatatacctaaaaaattattttttgcttata 30122081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 602
Target Start/End: Original strand, 37914524 - 37914654
Alignment:
Q  470 gtactccctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattat 569  Q
    |||||||||| |||||||||| | || |||||| |  ||||||||| ||||| || | |||||||| ||| |||||||| ||  |  ||||||| |||||    
T  37914524 gtactccctccggtcacatttctaaacaaaaaacaactttttaaattcattggataactaatgtatctgaactataaatgta--tagatacattaattat 37914621  T
Q  570 tcaatatatctaaaaaagtgttttttgcttata 602  Q
    |||||  | |||||||  | |||||||||||||    
T  37914622 tcaatgaacctaaaaatatattttttgcttata 37914654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 619
Target Start/End: Complemental strand, 40793622 - 40793569
Alignment:
Q  566 ttattcaatatatctaaaaaagtgttttttgcttatatatatgaccggagggag 619  Q
    ||||||||| ||| ||||||||| ||||||||||||| || |||||| ||||||    
T  40793622 ttattcaatgtatttaaaaaagtattttttgcttataaatgtgaccgaagggag 40793569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 471 - 620
Target Start/End: Original strand, 38562121 - 38562270
Alignment:
Q  471 tactccctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattatt 570  Q
    ||||||||  |||||||||||| |  |||||| |  || ||| ||||||||||| |||||||||| || ||||||||| | || | ||||||| ||||||    
T  38562121 tactcccttcggtcacatttataagcaaaaaacaacttgttagatacattgaataattaatgtatatgtcctataaatgtgaccggatacattaattatt 38562220  T
Q  571 caatatatctaaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    |||| ||||||||||| ||||||||||||||| || ||||||||||||||    
T  38562221 caatgtatctaaaaaattgttttttgcttataaatgtgaccggagggagt 38562270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 557 - 620
Target Start/End: Original strand, 44626478 - 44626541
Alignment:
Q  557 atacattgattattcaatatatctaaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    |||||||||||||||||||||| ||||||    |||||||||||||||| ||||||||||||||    
T  44626478 atacattgattattcaatatatttaaaaagtcattttttgcttatatatgtgaccggagggagt 44626541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 607
Target Start/End: Original strand, 2181641 - 2181733
Alignment:
Q  515 tacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatatatctaaaaaagtgttttttgcttatatatat 607  Q
    ||||||||||  ||||||||| | ||||||||||||||  | ||| ||| |||||| ||||| |||||||||   ||||||||||||||||||    
T  2181641 tacattgaatgcttaatgtatgtaacctataaatataatcggatatattaattatttaatatgtctaaaaaatcattttttgcttatatatat 2181733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 482 - 615
Target Start/End: Original strand, 20291788 - 20291921
Alignment:
Q  482 gtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatatatcta 581  Q
    ||||||||||| |  |||||| |  ||||||| || ||| ||| | |||||||| ||| |||||| ||  |||| |||||||  |||||||||| |||||    
T  20291788 gtcacatttataagcaaaaaacaactttttaagtatattaaataactaatgtatctgatctataattacgactggatacattagttattcaataaatcta 20291887  T
Q  582 aaaaagtgttttttgcttatatatatgaccggag 615  Q
    ||||  | ||||||||||||| |||||| |||||    
T  20291888 aaaagttattttttgcttataaatatgatcggag 20291921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 471 - 548
Target Start/End: Original strand, 52840263 - 52840340
Alignment:
Q  471 tactccctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaat 548  Q
    ||||||||| |||||||||||| |  |||||||| |||||||| |||||| ||| |||||||||| | || |||||||    
T  52840263 tactccctccggtcacatttataagcaaaaaataattttttaagtacattaaataattaatgtatctaacatataaat 52840340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 471 - 535
Target Start/End: Complemental strand, 38562271 - 38562207
Alignment:
Q  471 tactccctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtat 535  Q
    ||||||||| |||||||||||| |  |||||| | ||||||| ||||||||||| ||||||||||    
T  38562271 tactccctccggtcacatttataagcaaaaaacaattttttagatacattgaataattaatgtat 38562207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 620
Target Start/End: Complemental strand, 38562185 - 38562122
Alignment:
Q  557 atacattgattattcaatatatctaaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    ||||||| |||||||||| ||||||| ||  ||||||||||||||| || |||||| |||||||    
T  38562185 atacattaattattcaatgtatctaacaagttgttttttgcttataaatgtgaccgaagggagt 38562122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 471 - 586
Target Start/End: Complemental strand, 32522673 - 32522558
Alignment:
Q  471 tactccctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattatt 570  Q
    ||||| ||| |||||| ||||| |  |||||||||||||||||||||||||||| |||||||||| ||| |||||||| | |||| ||||||| ||||||    
T  32522673 tactcactccggtcacgtttataatcaaaaaatagttttttaaatacattgaataattaatgtatctgatctataaatgtgactgcatacattaattatt 32522574  T
Q  571 caatatatctaaaaaa 586  Q
    ||||||||| ||||||    
T  32522573 caatatatcaaaaaaa 32522558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 483 - 620
Target Start/End: Complemental strand, 28499914 - 28499778
Alignment:
Q  483 tcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatatatctaa 582  Q
    |||||||||| || ||||||||  |||||| ||| ||||||| |||||||||||| | |||||| ||| || | |||||||  |||||||||  ||||||    
T  28499914 tcacatttat-aagaaaaaataactttttagatatattgaataattaatgtatttaatctataattatgaccggatacattagttattcaatgaatctaa 28499816  T
Q  583 aaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    |||| | ||||||||||||| || ||||||||||||||    
T  28499815 aaaattattttttgcttataaatgtgaccggagggagt 28499778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 476 - 564
Target Start/End: Original strand, 38699046 - 38699134
Alignment:
Q  476 cctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattg 564  Q
    |||| |||||||||||| || |||||||| |||||||  ||||||  || ||||||||||||||||||||||||| |||| ||||||||    
T  38699046 cctccggtcacatttatgaacaaaaaataattttttaggtacattagataattaatgtatttgacctataaatatgactggatacattg 38699134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 507 - 614
Target Start/End: Original strand, 14509852 - 14509959
Alignment:
Q  507 tttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatatatctaaaaaagtgttttttgcttatatata 606  Q
    ||||||| |||||| ||| |||||||||||| ||  |||||||| | || ||||||| |||||||||||||||||||||| | ||||||  ||||| ||     
T  14509852 tttttaagtacattcaataattaatgtatttaactcataaatatgattggatacattaattattcaatatatctaaaaaattattttttatttataaatg 14509951  T
Q  607 tgaccgga 614  Q
    ||||||||    
T  14509952 tgaccgga 14509959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 507 - 602
Target Start/End: Original strand, 20269473 - 20269568
Alignment:
Q  507 tttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatatatctaaaaaagtgttttttgcttata 602  Q
    |||||| ||| ||||||| ||| |||||| ||||||| |||||| ||  |||||||| |||||||||| ||||||||||| ||||||||| |||||    
T  20269473 tttttagatatattgaataattgatgtatctgacctacaaatatgacgaaatacattaattattcaatgtatctaaaaaattgttttttgtttata 20269568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 470 - 620
Target Start/End: Complemental strand, 14751271 - 14751123
Alignment:
Q  470 gtactccctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattat 569  Q
    |||||||||| |||||||||||| |  |||||| |  ||||||  ||||||||||  || |||||| | |||||||||| |||||| ||||||| |||||    
T  14751271 gtactccctccggtcacatttataagcaaaaaacaactttttaggtacattgaatagttgatgtatctaacctataaatgtaactggatacattaattat 14751172  T
Q  570 tcaatatatctaaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    |||||  | || |||||||   ||||||||||| || ||||||||||||||    
T  14751171 tcaatgcacct-aaaaagt-cattttgcttatacatgtgaccggagggagt 14751123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 471 - 608
Target Start/End: Original strand, 14974868 - 14975005
Alignment:
Q  471 tactccctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattatt 570  Q
    ||||||||| ||||| ||||   ||||||||||   |||||| || |||| ||| | |||| ||||||| |||||||||| |||||||||||| |||||     
T  14974868 tactccctccggtcatattttcaaataaaaaatcactttttagattcattaaataactaatatatttgatctataaatatgactgaatacattaattata 14974967  T
Q  571 caatatatctaaaaaagtgttttttgcttatatatatg 608  Q
     |||| |||||||| | ||| |||| |||||| |||||    
T  14974968 taataaatctaaaatattgtattttacttataaatatg 14975005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 565 - 620
Target Start/End: Complemental strand, 11089340 - 11089285
Alignment:
Q  565 attattcaatatatctaaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    |||||||||| ||||||||||| | ||||||| ||||| |||||||||||||||||    
T  11089340 attattcaatgtatctaaaaaattattttttgattataaatatgaccggagggagt 11089285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 482 - 548
Target Start/End: Original strand, 6241367 - 6241433
Alignment:
Q  482 gtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaat 548  Q
    |||| |||||| ||||||||||| ||||||||||||||||||| |||||| ||| | || |||||||    
T  6241367 gtcatatttataaataaaaaataattttttaaatacattgaataattaatatatcttacatataaat 6241433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 481 - 535
Target Start/End: Complemental strand, 14509956 - 14509902
Alignment:
Q  481 ggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtat 535  Q
    |||||||||||| ||||||||||| ||||||| ||| ||||||| ||||||||||    
T  14509956 ggtcacatttataaataaaaaataattttttagatatattgaataattaatgtat 14509902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 482 - 535
Target Start/End: Complemental strand, 8568010 - 8567957
Alignment:
Q  482 gtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtat 535  Q
    ||||||||||| || |||||||  ||||||||||||||||||| ||||||||||    
T  8568010 gtcacatttataaacaaaaaatgattttttaaatacattgaataattaatgtat 8567957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 620
Target Start/End: Original strand, 5865930 - 5865985
Alignment:
Q  565 attattcaatatatctaaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    ||||||||||  | ||||||| |||||||||||||||| || ||||||||||||||    
T  5865930 attattcaatgaacctaaaaatgtgttttttgcttataaatgtgaccggagggagt 5865985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 616
Target Start/End: Original strand, 28351025 - 28351084
Alignment:
Q  557 atacattgattattcaatatatctaaaaaagtgttttttgcttatatatatgaccggagg 616  Q
    |||||||  |||||||||  |||||||||  ||||||||||||||| |||||||||||||    
T  28351025 atacattagttattcaatgaatctaaaaagttgttttttgcttataaatatgaccggagg 28351084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 483 - 537
Target Start/End: Complemental strand, 20269575 - 20269521
Alignment:
Q  483 tcacatttattaataaaaaatagttttttaaatacattgaattattaatgtattt 537  Q
    |||||||||| || |||||| | ||||||| ||||||||||| ||||||||||||    
T  20269575 tcacatttataaacaaaaaacaattttttagatacattgaataattaatgtattt 20269521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 567 - 620
Target Start/End: Original strand, 14751216 - 14751269
Alignment:
Q  567 tattcaatatatctaaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    |||||||| || |||||||  ||||||||||||||| || ||||||||||||||    
T  14751216 tattcaatgtacctaaaaagttgttttttgcttataaatgtgaccggagggagt 14751269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 497 - 601
Target Start/End: Original strand, 15996137 - 15996241
Alignment:
Q  497 aaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatatatctaaaaaagtgttttttg 596  Q
    |||||| | |||||||  |||||||||| |||||||||| |||||||||||  | | || ||||||| |||||||||| |||||||||||||||||||||    
T  15996137 aaaaaacaattttttaggtacattgaataattaatgtatctgacctataaacgtgattggatacattaattattcaatgtatctaaaaaagtgttttttg 15996236  T
Q  597 cttat 601  Q
    |||||    
T  15996237 cttat 15996241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 515 - 601
Target Start/End: Original strand, 14574997 - 14575083
Alignment:
Q  515 tacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatatatctaaaaaagtgttttttgcttat 601  Q
    |||||| ||| |||||||||| ||||| |||||  | | || ||||||| |||||| ||| ||||||| ||||||||||||||||||    
T  14574997 tacattaaataattaatgtatctgaccaataaacgttattggatacattaattattaaatgtatctaacaaagtgttttttgcttat 14575083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 481 - 620
Target Start/End: Original strand, 2399705 - 2399844
Alignment:
Q  481 ggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatatatct 580  Q
    |||||||||||| |  |||||| |  ||| ||| ||||||||||  ||||||||| | || ||||||| | || | ||||||| |||||||||||||  |    
T  2399705 ggtcacatttataagcaaaaaacaactttctaagtacattgaatagttaatgtatctaacttataaatgtgaccggatacattaattattcaatatactt 2399804  T
Q  581 aaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    |||||  | ||||||  ||||| ||||||| |||||||||    
T  2399805 aaaaagttattttttatttataaatatgacaggagggagt 2399844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 481 - 574
Target Start/End: Complemental strand, 21955470 - 21955377
Alignment:
Q  481 ggtcacatttattaat-aaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaat 574  Q
    |||||||||||| ||| |||||| |  |||||| ||||||||||| ||| |||||| |||| ||||||| | |||| ||||||| ||||||||||    
T  21955470 ggtcacatttataaataaaaaaacaactttttagatacattgaataatt-atgtatctgacatataaatgtgactggatacattaattattcaat 21955377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 507 - 620
Target Start/End: Original strand, 4743 - 4856
Alignment:
Q  507 tttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatatatctaaaaaagtgttttttgcttatatata 606  Q
    ||||||||| |||||||| | ||||||||||||  ||||||| | |||  ||||||| ||||||| ||| | ||||||||  |||||||||||||| |||    
T  4743 tttttaaattcattgaataactaatgtatttgatatataaatgtgactagatacattaattattccataaacctaaaaaacggttttttgcttataaata 4842  T
Q  607 tgaccggagggagt 620  Q
    ||||||||||||||    
T  4843 tgaccggagggagt 4856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 469 - 620
Target Start/End: Complemental strand, 862968 - 862818
Alignment:
Q  469 agtactccctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgatta 568  Q
    ||||||||||| |||||||||||| |  |||||| | ||||||| ||||||||||| |||||||||| | |||||||||| | |||| |||||    |||    
T  862968 agtactccctccggtcacatttataagcaaaaaaca-ttttttagatacattgaataattaatgtatctaacctataaatgtgactggatacaccagtta 862870  T
Q  569 ttcaatatatctaaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    |||||| || |||||||     |||||||||||| |||||||||||||||||    
T  862869 ttcaatgtacctaaaaagtcaatttttgcttataaatatgaccggagggagt 862818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 515 - 626
Target Start/End: Original strand, 16260662 - 16260772
Alignment:
Q  515 tacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatatatctaaaaaagtgttttttgcttatatatatgaccgga 614  Q
    |||||||||| |||||||| | | |||||||||| | |||||||||||| |||||||||||||  |||||||   |||||| |||||| || ||||||||    
T  16260662 tacattgaataattaatgtctctaacctataaatgtgactgaatacattaattattcaatatacgtaaaaaataatttttttcttataaatgtgaccgga 16260761  T
Q  615 gggagttatatt 626  Q
    ||| ||||||||    
T  16260762 ggg-gttatatt 16260772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 557 - 620
Target Start/End: Original strand, 862903 - 862965
Alignment:
Q  557 atacattgattattcaatatatctaaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||| || ||||||||||||||    
T  862903 atacattaattattcaatgtatctaaaaaa-tgttttttgcttataaatgtgaccggagggagt 862965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 471 - 586
Target Start/End: Original strand, 26296203 - 26296319
Alignment:
Q  471 tactccctctggtcacatttattaataaaaaat-agttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattat 569  Q
    ||||||||| ||||| |||||| | |||||||  |  |||||||||||||| ||| |||||||||||| | |||||||| | |||| |||| || |||||    
T  26296203 tactccctccggtcatatttataagtaaaaaaacaactttttaaatacattaaataattaatgtatttaatctataaatgtgactgtatacgttaattat 26296302  T
Q  570 tcaatatatctaaaaaa 586  Q
    ||||| ||| |||||||    
T  26296303 tcaatgtatttaaaaaa 26296319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 497 - 595
Target Start/End: Original strand, 8050999 - 8051097
Alignment:
Q  497 aaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatatatctaaaaaagtgtttttt 595  Q
    |||||||| ||||||||||| ||||||| |||||||||| | | |||||||| | | | |||||||| |||||| ||| |||| |||||| | ||||||    
T  8050999 aaaaaataattttttaaatatattgaataattaatgtatataatctataaatgtgattaaatacattaattattaaatgtatccaaaaaattatttttt 8051097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 620
Target Start/End: Complemental strand, 5070029 - 5069936
Alignment:
Q  527 ttaatgtatttgacctataaatataactgaatacattgattattcaatatatctaaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    ||||||||| | |||||| |||||  | | ||||||| |||||||||| ||||||||||  ||||||||||||||| || ||| | ||||||||    
T  5070029 ttaatgtatctaacctattaatatggccggatacattaattattcaatgtatctaaaaagttgttttttgcttataaatgtgatcagagggagt 5069936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 563
Target Start/End: Complemental strand, 20890225 - 20890169
Alignment:
Q  507 tttttaaatacattgaattattaatgtatttgacctataaatataactgaatacatt 563  Q
    |||||||||||||||||| |||| ||||| |||| ||||| ||||||| ||||||||    
T  20890225 tttttaaatacattgaatgattattgtatctgacatataattataactaaatacatt 20890169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 471 - 616
Target Start/End: Complemental strand, 24253026 - 24252885
Alignment:
Q  471 tactccctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattatt 570  Q
    |||| |||||||||| |||||| |  ||||||||  ||||||  |||||||||| ||||||||||     |||||||| | || ||||||||| ||||||    
T  24253026 tacttcctctggtcatatttataagcaaaaaataactttttaggtacattgaataattaatgtat-----ctataaatgtgaccgaatacattaattatt 24252932  T
Q  571 caatatatctaaaaaagt--gttttttgcttatatatatgaccggagg 616  Q
    ||||||| || |||||||   |||||| |||||| |||| ||||||||    
T  24252931 caatata-cttaaaaagtcatttttttacttataaatataaccggagg 24252885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 471 - 545
Target Start/End: Original strand, 3846426 - 3846500
Alignment:
Q  471 tactccctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctata 545  Q
    ||||||||  |||||||||||| |  |||||||| |||||||| | |||||||| | |||||||| |||||||||    
T  3846426 tactcccttcggtcacatttataagcaaaaaataattttttaagttcattgaataaataatgtatatgacctata 3846500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 615
Target Start/End: Original strand, 674140 - 674189
Alignment:
Q  566 ttattcaatatatctaaaaaagtgttttttgcttatatatatgaccggag 615  Q
    |||||||||  |||||||||| ||||||||||||||| || |||||||||    
T  674140 ttattcaatgaatctaaaaaattgttttttgcttataaatgtgaccggag 674189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 8e-17; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 471 - 620
Target Start/End: Complemental strand, 24419678 - 24419529
Alignment:
Q  471 tactccctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattatt 570  Q
    |||||| || |||||||||||| |  |||||| |  ||||||  |||||||||| |||||||||| |||| ||||| ||| |||| |||||||  || ||    
T  24419678 tactccttccggtcacatttataagcaaaaaacaactttttaggtacattgaataattaatgtatctgacttataattatgactggatacattagttctt 24419579  T
Q  571 caatatatctaaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    ||||  |||||||||  | ||||||||||||| || ||||||||||||||    
T  24419578 caatgaatctaaaaagttcttttttgcttataaatgtgaccggagggagt 24419529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 474 - 620
Target Start/End: Original strand, 35489195 - 35489341
Alignment:
Q  474 tccctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaa 573  Q
    |||||| |||||||||||| |  |||||| |  |||||| ||||||||||| |||||||||| | |||||||||||| ||   || |||| |||||||||    
T  35489195 tccctccggtcacatttataatcaaaaaacaactttttagatacattgaataattaatgtatctaacctataaatatcaccagattcattaattattcaa 35489294  T
Q  574 tatatctaaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    | ||  ||||||    ||||||||||||| || ||||||||||||||    
T  35489295 tgtacataaaaagtcattttttgcttataaatgtgaccggagggagt 35489341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 471 - 585
Target Start/End: Complemental strand, 49166753 - 49166639
Alignment:
Q  471 tactccctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattatt 570  Q
    |||||||||||||||||||||| |  |||||| |  ||||||  |||||||||| |||||||||| | |||||||||| | |||| ||||||| ||||||    
T  49166753 tactccctctggtcacatttataagcaaaaaacaactttttagttacattgaataattaatgtatctaacctataaatgtgactggatacattaattatt 49166654  T
Q  571 caatatatctaaaaa 585  Q
     ||| || |||||||    
T  49166653 taatgtacctaaaaa 49166639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 482 - 616
Target Start/End: Complemental strand, 5700168 - 5700032
Alignment:
Q  482 gtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatatat--c 579  Q
    ||||||||||| |  |||||| |  ||||||| |||||||||| ||||||| |||||| |||||||||| |  | ||||||| ||||||||||||||       
T  5700168 gtcacatttataagcaaaaaacaactttttaagtacattgaataattaatgcatttgatctataaatatgatcggatacattaattattcaatatataat 5700069  T
Q  580 taaaaaagtgttttttgcttatatatatgaccggagg 616  Q
    ||||||  | ||||||||||||| |||||| ||||||    
T  5700068 taaaaagctattttttgcttataaatatgatcggagg 5700032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 515 - 609
Target Start/End: Original strand, 11900867 - 11900961
Alignment:
Q  515 tacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatatatctaaaaaagtgttttttgcttatatatatga 609  Q
    |||||||||| ||||||||||||||||||||||| | ||   ||| ||| |||||||||| ||||||||||  || |||||| ||||| ||||||    
T  11900867 tacattgaataattaatgtatttgacctataaatgtgaccagatatattaattattcaatgtatctaaaaagttggtttttgtttataaatatga 11900961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 526 - 616
Target Start/End: Original strand, 36618858 - 36618948
Alignment:
Q  526 attaatgtatttgacctataaatataactgaatacattgattattcaatatatctaaaaaagtgttttttgcttatatatatgaccggagg 616  Q
    ||||| |||| |||| ||||||| | | |||||||||| |||||||||| ||  ||||||| |||||||| |||||| |||||||||||||    
T  36618858 attaacgtatctgacttataaatgtgattgaatacattaattattcaatgtagttaaaaaattgttttttacttataaatatgaccggagg 36618948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 481 - 585
Target Start/End: Original strand, 8900799 - 8900903
Alignment:
Q  481 ggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatatatct 580  Q
    |||||||||||| | ||| ||| |  ||||||  |||||||||| |||||||||| | |||||||||| | || | ||||||| ||||||||||||| ||    
T  8900799 ggtcacatttataagtaataaacaactttttaggtacattgaataattaatgtatctaacctataaatgtgaccggatacattaattattcaatatacct 8900898  T
Q  581 aaaaa 585  Q
    |||||    
T  8900899 aaaaa 8900903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 557 - 620
Target Start/End: Original strand, 25395998 - 25396061
Alignment:
Q  557 atacattgattattcaatatatctaaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    ||||||| || | |||||||| |||||| | ||||||||||||||| |||||||||||||||||    
T  25395998 atacattaatgactcaatatacctaaaacattgttttttgcttataaatatgaccggagggagt 25396061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 485 - 616
Target Start/End: Complemental strand, 47084695 - 47084564
Alignment:
Q  485 acatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatatatctaaaa 584  Q
    |||||||| || |||| ||| |||||||  | ||| |||| | |||||||||||| |||||||||| ||  |||||||| ||||||  ||| || |||||    
T  47084695 acatttataaacaaaacataattttttaggttcatagaataactaatgtatttgatctataaatatgaccaaatacattaattatttgataaatttaaaa 47084596  T
Q  585 aagtgttttttgcttatatatatgaccggagg 616  Q
    |  ||| |||||| |||| |||||||||||||    
T  47084595 agttgtgttttgcatataaatatgaccggagg 47084564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 620
Target Start/End: Original strand, 5368824 - 5368918
Alignment:
Q  526 attaatgtatttgacctataaatataactgaatacattgattattcaatatatctaaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    |||||||||| | ||| |||||| | || | ||||||| ||||||||||  |||||||||  |  |||||||||||| |||||||||||||||||    
T  5368824 attaatgtatctaacccataaatgtgaccggatacattaattattcaatgcatctaaaaagttaatttttgcttataaatatgaccggagggagt 5368918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 497 - 611
Target Start/End: Original strand, 37247593 - 37247707
Alignment:
Q  497 aaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatatatctaaaaaagtgttttttg 596  Q
    ||||||||  |||||| ||||||||||| |||||||||| | |||||||||| |||||| |||  || |||||| ||| ||| ||||||  | ||||||     
T  37247593 aaaaaataaatttttagatacattgaataattaatgtatctaacctataaatgtaactgtatatgttaattattaaatgtatttaaaaagttatttttta 37247692  T
Q  597 cttatatatatgacc 611  Q
    |||||| || |||||    
T  37247693 cttataaatgtgacc 37247707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 566 - 619
Target Start/End: Complemental strand, 34890236 - 34890183
Alignment:
Q  566 ttattcaatatatctaaaaaagtgttttttgcttatatatatgaccggagggag 619  Q
    ||||||||| ||||||||||  |||||||||||||||||| |||||||| ||||    
T  34890236 ttattcaatgtatctaaaaagttgttttttgcttatatatgtgaccggatggag 34890183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 507 - 620
Target Start/End: Original strand, 34890217 - 34890330
Alignment:
Q  507 tttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatatatctaaaaaagtgttttttgcttatatata 606  Q
    |||||| ||||||||||| | |||| ||| | || ||||||| |||| | ||||||| ||||||||||  |||||||| ||| |||||| |||||| ||     
T  34890217 tttttagatacattgaataactaatatatctaacatataaatgtaaccggatacattaattattcaatgaatctaaaatagtatttttttcttataaatg 34890316  T
Q  607 tgaccggagggagt 620  Q
    | | ||||||||||    
T  34890317 taatcggagggagt 34890330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 557 - 618
Target Start/End: Complemental strand, 35489256 - 35489195
Alignment:
Q  557 atacattgattattcaatatatctaaaaaagtgttttttgcttatatatatgaccggaggga 618  Q
    ||||||| |||||||||| ||||||||||  ||||||||| ||||| || ||||||||||||    
T  35489256 atacattaattattcaatgtatctaaaaagttgttttttgattataaatgtgaccggaggga 35489195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 620
Target Start/End: Original strand, 24419614 - 24419677
Alignment:
Q  557 atacattgattattcaatatatctaaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    ||||||| |||||||||| || |||||||  ||||||||||||||| || |||||||| |||||    
T  24419614 atacattaattattcaatgtacctaaaaagttgttttttgcttataaatgtgaccggaaggagt 24419677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 620
Target Start/End: Original strand, 49166689 - 49166752
Alignment:
Q  557 atacattgattattcaatatatctaaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    ||||||| |||||||||| || |||||||  ||||||||||||||| || ||||| ||||||||    
T  49166689 atacattaattattcaatgtaactaaaaagttgttttttgcttataaatgtgaccagagggagt 49166752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 470 - 536
Target Start/End: Complemental strand, 36618954 - 36618888
Alignment:
Q  470 gtactccctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatt 536  Q
    ||||| |||| ||||| |||||| | ||||||| | |||||||| |||||||||| |||||||||||    
T  36618954 gtacttcctccggtcatatttataagtaaaaaacaattttttaactacattgaataattaatgtatt 36618888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 602
Target Start/End: Complemental strand, 1610023 - 1609978
Alignment:
Q  557 atacattgattattcaatatatctaaaaaagtgttttttgcttata 602  Q
    ||||||| |||||||||| ||||||||||  |||||||||||||||    
T  1610023 atacattaattattcaatgtatctaaaaagttgttttttgcttata 1609978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 482 - 616
Target Start/End: Complemental strand, 32516268 - 32516134
Alignment:
Q  482 gtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatatatcta 581  Q
    ||||||||||| | ||||| | | |||||||||| |||||||| |||||||||||||  |||||||| | ||  ||||| || ||||||  |||||||||    
T  32516268 gtcacatttataagtaaaacacaattttttaaattcattgaataattaatgtatttggtctataaatgtgacaaaatacgttaattattttatatatcta 32516169  T
Q  582 aaaaagtgttttttgcttatatatatgaccggagg 616  Q
    ||||   |||||||||||||| || ||||| ||||    
T  32516168 aaaagtagttttttgcttataaatgtgaccagagg 32516134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 481 - 585
Target Start/End: Complemental strand, 33956421 - 33956317
Alignment:
Q  481 ggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattattcaatatatct 580  Q
    |||||||||||| |  ||||||||  |||||| ||| ||||||| |||||||||| | || ||||||||| || | ||||||| |||||||||| ||| |    
T  33956421 ggtcacatttataagaaaaaaataaatttttagatatattgaataattaatgtatctaacttataaatatgaccggatacattaattattcaatgtatat 33956322  T
Q  581 aaaaa 585  Q
    |||||    
T  33956321 aaaaa 33956317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 558 - 620
Target Start/End: Complemental strand, 11565059 - 11564997
Alignment:
Q  558 tacattgattattcaatatatctaaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    |||||| |||||||||| |||||||||   ||||||||||||||| || ||||||||||||||    
T  11565059 tacattaattattcaatgtatctaaaatgttgttttttgcttataaatgtgaccggagggagt 11564997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 471 - 611
Target Start/End: Original strand, 11564996 - 11565137
Alignment:
Q  471 tactccctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtatttgacctataaatataactgaatacattgattatt 570  Q
    ||||||||| |||||||||||| |  |||||| |   ||||| ||||||||||| |||||||||  ||| |||||||| | |||| ||||||| | ||||    
T  11564996 tactccctccggtcacatttataagcaaaaaacaacattttagatacattgaataattaatgtacctgatctataaatgtgactggatacattaaatatt 11565095  T
Q  571 caatatatct-aaaaaagtgttttttgcttatatatatgacc 611  Q
     ||| ||  | |||||| ||||||||||||||| || |||||    
T  11565096 gaatgtacataaaaaaactgttttttgcttataaatgtgacc 11565137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 618
Target Start/End: Complemental strand, 27279577 - 27279485
Alignment:
Q  526 attaatgtatttgacctataaatataactgaatacattgattattcaatatatctaaaaaagtgttttttgcttatatatatgaccggaggga 618  Q
    |||||||||| |||||||||| ||| |  | |||||||  |||||||||  | |||||||| | ||||||||||||| || ||||||||||||    
T  27279577 attaatgtatctgacctataattatgatcggatacattagttattcaatgaacctaaaaaattattttttgcttataaatgtgaccggaggga 27279485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 471 - 535
Target Start/End: Complemental strand, 41517509 - 41517445
Alignment:
Q  471 tactccctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtat 535  Q
    ||||||||| |||||||||||| |  ||||||||  ||||||| |||||||||| ||||||||||    
T  41517509 tactccctccggtcacatttataagcaaaaaataactttttaagtacattgaataattaatgtat 41517445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 477 - 535
Target Start/End: Complemental strand, 14725350 - 14725292
Alignment:
Q  477 ctctggtcacatttattaataaaaaatagttttttaaatacattgaattattaatgtat 535  Q
    |||||||||| | ||| || |||||||| ||||||| ||||||||||| ||||||||||    
T  14725350 ctctggtcacgtatataaacaaaaaataattttttatatacattgaataattaatgtat 14725292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 579 - 620
Target Start/End: Complemental strand, 9733516 - 9733475
Alignment:
Q  579 ctaaaaaagtgttttttgcttatatatatgaccggagggagt 620  Q
    |||||||| ||||||||||||||| || ||||||||||||||    
T  9733516 ctaaaaaattgttttttgcttataaatgtgaccggagggagt 9733475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 548
Target Start/End: Complemental strand, 43336584 - 43336543
Alignment:
Q  507 tttttaaatacattgaattattaatgtatttgacctataaat 548  Q
    |||||| ||||||||||| | |||||||||||||||||||||    
T  43336584 tttttagatacattgaataactaatgtatttgacctataaat 43336543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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