View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_high_10 (Length: 541)
Name: NF20146_high_10
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 268
Target Start/End: Complemental strand, 43072039 - 43071784
Alignment:
| Q |
13 |
aaaatgacaataaatttttagatgctttgtcctttcatgtaggaaaggattagcttcgatgttaatcgcactctagttgtcacaatattgtgttgaaagt |
112 |
Q |
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| T |
43072039 |
aaaatgacaataaatttttagatgctttgtcctttcatgtaggaaaggattagcttcgatgttaatcgcactctggttgtcacaatattgtgttgaaagt |
43071940 |
T |
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| Q |
113 |
ttgctacaatgtactcccaaatcagccaacaaataaggtaaccacgacaacccgcaactaacaaaggataacgtcgtatactctgccttatatagtttat |
212 |
Q |
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| T |
43071939 |
ttgctacaatgtactcccaaatcagccaacaaataaggtaaccacgacaacccgcaactaacaaaggataacgtcgtatactctgccttatatagtttat |
43071840 |
T |
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| Q |
213 |
atttgaggtactaaaatcaaatgttctacttaagatagagaaatcaatttaagtac |
268 |
Q |
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| T |
43071839 |
atttgaggtactaaaatcaaatgttctacttaagatagagaaatcaatttaagtac |
43071784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 312 - 439
Target Start/End: Complemental strand, 43071740 - 43071602
Alignment:
| Q |
312 |
tgtaatggcaaattattttttatagacacaagaaaatgatatatttaaatgaatt-----------gaaacttgaattttttacgtaccttacaaatagt |
400 |
Q |
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| T |
43071740 |
tgtaatggcaaattattttttatagacacaagaaaattatatatttaaatgaattaaaacttaattgaaacttgaattttttacgtaccttacaaatagt |
43071641 |
T |
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| Q |
401 |
attaattaattatcctttctgtctagatttatattactt |
439 |
Q |
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| T |
43071640 |
attaattaattatcctttctatctagatttagattactt |
43071602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 440 - 515
Target Start/End: Complemental strand, 43071420 - 43071341
Alignment:
| Q |
440 |
aaagaattaagttagggggttaaatataattttttaaatttcagggtgtg----tgcacaccgtcaactctatgtggctc |
515 |
Q |
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| T |
43071420 |
aaagaattaagttagggggttaaatataattttttaaatttcagggtgtgcacatgcacaccgtcaactctatgtggctc |
43071341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 397 - 439
Target Start/End: Complemental strand, 43071588 - 43071546
Alignment:
| Q |
397 |
tagtattaattaattatcctttctgtctagatttatattactt |
439 |
Q |
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| T |
43071588 |
tagtattaattaattatcctttctatctagatttatattactt |
43071546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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