View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_high_15 (Length: 414)
Name: NF20146_high_15
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_high_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 32528445 - 32528841
Alignment:
| Q |
18 |
atactcgtgtttttctctaatgaaagtctttcattggatgaagtttctattgggtaaaagattccctattgaaaatgcatgctctaattcacgtcatcat |
117 |
Q |
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| T |
32528445 |
atactcgtgtttttctctaatgaaagtcttgaataggatgaagtttctattgggtaaaagattccctattgaaaatgcatgctctaattcacgtcatcat |
32528544 |
T |
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| Q |
118 |
ttcattcatgcatactcatttttccaataaataacagcttagttgaattacttgaagtaattcattccacgattctgtttggtgcacccactgtagtacg |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32528545 |
ttcatttatgcatactcatttttccaataaataacagcttagttgaattacttgaagtaattcattccacgattctgtttggtgcacccactgtagtacg |
32528644 |
T |
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| Q |
218 |
ctctaacgagcaagaacaatgaatagcattgttgaattaagttttcaatttacatgacttatatttaaactgcatatatactgaaattcactcatcatca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32528645 |
ctctaacgagcaagaacaatgaatagcattgttgaattaagttttcaatttacatgacttatatttaaactgcatatatactgaaattcactcatcatca |
32528744 |
T |
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| Q |
318 |
aaatcacgcaagctcgacattctcctatatactcattttataaatgctgcctttatgcaacaacaaaacaacatttaaataaaacattattggattc |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32528745 |
aaatcacgcaagctcgacattctcctatatactcattttataaatgctgcctttatgcaacaacaaaacaacatttaaataaaacattattggattc |
32528841 |
T |
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