View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_high_19 (Length: 365)
Name: NF20146_high_19
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 4493625 - 4493970
Alignment:
| Q |
1 |
tcataattaacaaacctgatggtggtgatgtttatgaaggagttccaaaggtaaagtcaattttagtttcttgcaactagcaccgacacttcacactaaa |
100 |
Q |
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| T |
4493625 |
tcataattaacaaacctgatggtggtgatgtttatgaaggagttccaaaggtaaagtcaattttagtttcttgcaactagcaccgacacttcacactaaa |
4493724 |
T |
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| Q |
101 |
tacgtctctgatgttcgacaaatgtcggtgtccatattgttacattcaatagcttcaatttctcaaatgattactggtgtgtatgtgttagtgttgtgtc |
200 |
Q |
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| T |
4493725 |
gacgtctctgatgttcgacaaatgtcggtgtccatattgttacattcaatagcttcaatttctcaaatgattactggtgtgtatgtgttagtgttgtgtc |
4493824 |
T |
|
| Q |
201 |
cagtgttcgtgtctattttattgcttcataggtttttactttttaggcatctaatgtcctatttctatgtaatgtttgattatctaataagagctttttc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4493825 |
cagtgttcgtgtctattttattgcttcataggtttttactttttaggcatctaatgtcctattgctatgtaatgtttgattatctaataagagctttttc |
4493924 |
T |
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| Q |
301 |
ttatgacaggattacactggtgcagaggtacatgctgacaatttct |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4493925 |
ttatgacaggattacactggtgcagaggtacatgctgacaatttct |
4493970 |
T |
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