View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20146_high_21 (Length: 347)

Name: NF20146_high_21
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20146_high_21
NF20146_high_21
[»] scaffold0155 (1 HSPs)
scaffold0155 (18-339)||(340-661)
[»] chr4 (3 HSPs)
chr4 (18-227)||(42390193-42390402)
chr4 (18-339)||(42394450-42394774)
chr4 (18-319)||(42378555-42378856)


Alignment Details
Target: scaffold0155 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 661 - 340
Alignment:
Q  18 acactcctcatcacactcttaacaatttccacaatcatttggtacttatatatcttcttcttcaaatccaagtcccagaacctacccccagggccgccgg 117  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||    
T  661 acactcctcatcacactcttaacaatttccacaatcatttagtacttatatatcttcttcttcaaatcaaagtcccataacctacccctagggccgccgg 562  T
Q  118 gccttcctatcttcggtaacctcctatctctcgatcctgaactccacacttacttcgccgggctagcccaaacccacggcccaattttcaagctcaggct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  561 gccttcctatcttcggtaacctcctatctctcgatcctgaactccacacttacttcgtcgggctagcccaaacccacggcccaattttcaagctcaggct 462  T
Q  218 tggtagcaaactcggcatcgtcataacttcaccttccacagcccgtgaagttcttaaagactacgacaccgttttcgccaaccgtgatccccctgccgcc 317  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  461 tggtagcaaactcggtatcgtcataacttcaccttccacagctcgtgaagttcttaaagactacgacaccgttttcaccaaccgtgatccccctgctgcc 362  T
Q  318 ggaaaagcagctacatacggtg 339  Q
    ||||||||||||||||||||||    
T  361 ggaaaagcagctacatacggtg 340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 42390402 - 42390193
Alignment:
Q  18 acactcctcatcacactcttaacaatttccacaatcatttggtacttatatatcttcttcttcaaatccaagtcccagaacctacccccagggccgccgg 117  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  42390402 acactcctcatcacactcttaacaatttccacaatcctttggtacttatatatcttcttcttcaaatcaaagtcccagaacctaccccaagggccgccgg 42390303  T
Q  118 gccttcctatcttcggtaacctcctatctctcgatcctgaactccacacttacttcgccgggctagcccaaacccacggcccaattttcaagctcaggct 217  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  42390302 gccttcctatcttcggtaacctcctatctctcgatcccgaactccacacttacttcgcctggctagcccaagcccacggcccaattttcaagctcaggct 42390203  T
Q  218 tggtagcaaa 227  Q
    ||||||||||    
T  42390202 tggtagcaaa 42390193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 42394774 - 42394450
Alignment:
Q  18 acactcctcatcacactcttaacaatttccacaatcatttggtacttatatatcttcttcttcaaatccaagtcccagaacc---tacccccagggccgc 114  Q
    ||||| |||||  |||||||||| ||||||||||||||||||||  | ||| ||| |||||||||||| ||  |||| |||    |||| ||||| |||     
T  42394774 acactactcataccactcttaaccatttccacaatcatttggtatatgtatctctacttcttcaaatcaaaaccccaaaacaacttaccaccaggcccgt 42394675  T
Q  115 cgggccttcctatcttcggtaacctcctatctctcgatcctgaactccacacttacttcgccgggctagcccaaacccacggcccaattttcaagctcag 214  Q
    |||||||||||||  |||||||||| ||||| ||||| || || || |||||||||||| |||| ||||||||| |||||||||||||||||||||||||    
T  42394674 cgggccttcctattatcggtaaccttctatcactcgagccagagcttcacacttacttcaccggcctagcccaagcccacggcccaattttcaagctcag 42394575  T
Q  215 gcttggtagcaaactcggcatcgtcataacttcaccttccacagcccgtgaagttcttaaagactacgacaccgttttcgccaaccgtgatccccctgcc 314  Q
    ||||||||||||||| ||||||||  |||||||||||||||  || ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  42394574 gcttggtagcaaacttggcatcgtgttaacttcaccttccatggctcgtgaagttctaaaagactacgacaccattttcgccaaccgtgatccccctgcc 42394475  T
Q  315 gccggaaaagcagctacatacggtg 339  Q
    |||||||||||||||||||| ||||    
T  42394474 gccggaaaagcagctacatatggtg 42394450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 42378856 - 42378555
Alignment:
Q  18 acactcctcatcacactcttaacaatttccacaatcatttggtacttatatatcttcttcttcaaatccaagtcccagaacctacccccagggccgccgg 117  Q
    |||||||||||  |||||||||||||||||| ||||| ||||||||||||| ||| |||||||||||| ||  |||| |||||||| ||||| || ||||    
T  42378856 acactcctcatagcactcttaacaatttccataatcacttggtacttatatctctacttcttcaaatctaaaacccaaaacctaccaccaggcccaccgg 42378757  T
Q  118 gccttcctatcttcggtaacctcctatctctcgatcctgaactccacacttacttcgccgggctagcccaaacccacggcccaattttcaagctcaggct 217  Q
    || |||| |||||||| ||||| ||||| ||||| || ||||| ||||||||||||||||| ||||||||| ||||||||||||||| ||||||| ||||    
T  42378756 gctttcccatcttcggaaaccttctatcactcgacccagaacttcacacttacttcgccggactagcccaagcccacggcccaatttacaagctctggct 42378657  T
Q  218 tggtagcaaactcggcatcgtcataacttcaccttccacagcccgtgaagttcttaaagactacgacaccgttttcgccaaccgtgatccccctgccgcc 317  Q
     || ||||||||||| || ||  | ||||||||||||||||| ||  ||||||| |||||| ||||||| |||||||||||||||||   ||||||||||    
T  42378656 cggaagcaaactcggtattgttttgacttcaccttccacagcacgccaagttctaaaagaccacgacacagttttcgccaaccgtgacgtccctgccgcc 42378557  T
Q  318 gg 319  Q
    ||    
T  42378556 gg 42378555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University