View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_high_25 (Length: 316)
Name: NF20146_high_25
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 43118775 - 43118472
Alignment:
| Q |
1 |
cacataataaaatgaggtaaggtgataaagggtctcgttgtttaagacctaaacaagagttaaaaggagaagaatatttgtagttaagaagaacgtaaaa |
100 |
Q |
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| T |
43118775 |
cacataataaaatgaggtaaggtgataaagggtctcgttgtttaagacctagacaagagttaaaaggagaagaatattagcagttaaaaagaacgtaaaa |
43118676 |
T |
|
| Q |
101 |
agatactaaggtaatacacttacatacaatgtttatccaattattagaaaatattgtaaaaaacgtaatttgtttaacaaattttcaattaatgcgatca |
200 |
Q |
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| T |
43118675 |
agatactaaggtaatacatttacatataagatttatccaattattagaaaatcttgtaaaaaacgtaatttgtttaacaaattttcaattaatgcgatca |
43118576 |
T |
|
| Q |
201 |
taaattttaacacatctaacttgatatcaaaatgacaaaatttacttttctttttgtaccaaacggaaaatgttatacgttatataagtattatgagtga |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43118575 |
taaattttgacacatctaacttgatatcaaaatgaccaaatttacctttctttttgtaccaaacggaaaatgttatacgttatataagtattatgagtga |
43118476 |
T |
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| Q |
301 |
tgag |
304 |
Q |
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|||| |
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| T |
43118475 |
tgag |
43118472 |
T |
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