View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20146_high_3 (Length: 716)

Name: NF20146_high_3
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20146_high_3
NF20146_high_3
[»] chr4 (1 HSPs)
chr4 (10-698)||(32667328-32668020)


Alignment Details
Target: chr4 (Bit Score: 615; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 10 - 698
Target Start/End: Complemental strand, 32668020 - 32667328
Alignment:
Q  10 ataatactatcataataatgtaatataatgggtttaaaatgtacaatgagatgaaattgattcgcatctttagtggaataacgcgtacactcataagttt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32668020 ataatactatcataataatgtaatataatgggtttaaaatgtacaatgagatgaaattgattcgcatctttagtggaataacgcgtacactcataagttt 32667921  T
Q  110 gactaaaacccaattggttctccccaaaattattacacaacaacattttgtaccaaccttatagctaagtcgtttgtcactaacaacaaaattttccacc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32667920 gactaaaacccaattggttctccccaaaattattacacaacaacattttgtaccaaccttatagctaagtcgtttgtcactaacaacaaaattttccacc 32667821  T
Q  210 ccaattctcacgtttccttcaataaatacaatccacaagcacacaaatttgaaacttccatgttataatgcaaattagcctcttgtacatattctactca 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||  ||||||||    
T  32667820 ccaattctcacgtttccttcaataaatacaatccacaagcacacaaatttgaaacttccatgctacaatgcaaattagcctcttgtacattatctactca 32667721  T
Q  310 tatatttaacaatatattcctatttccttcattagcaattagccatagcacaaaattataagccagtccatgggctgcacatttagtgtataaatnnnnn 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  32667720 tatatttaacaatatattcctatttccttcattagcaattagccatagcacaaaattataagccagtccatgggctgcacatttagtgtataaataaaaa 32667621  T
Q  410 nnttatttacgatcgtgatcagagcgctaccacttgacatgtaactacaattg----aggttgtatcaatcatatttgaccgtgattttcttttgtgcga 505  Q
      ||||||| |||||||||||||||||| |||||||||||||||| |||||||    |||||||||||| ||||||||||||||||||||||||||||||    
T  32667620 aattatttatgatcgtgatcagagcgctgccacttgacatgtaaccacaattgaggtaggttgtatcaaccatatttgaccgtgattttcttttgtgcga 32667521  T
Q  506 agaatcatgacacgaaaattatcatcaccgcgaccacaatttagcacataacttattgaaagtgtgcagctagcaatatcaagtttcaaaatcagaaaat 605  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32667520 agaatcatgacacgaaaactatcataaccgcgaccacaatttagcacataacttattgaaagtgtgcagctagcaatatcaagtttcaaaatcagaaaat 32667421  T
Q  606 ggcaagaggattgaaggttctatcagcccttgactcagcaaaaacacaatactaccatttcaaggccatcatcatagcaggaatgggactttt 698  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32667420 ggcaagaggattgaaggttctatcagcccttgactcagcaaaaacacaatactaccatttcaaggccatcatcatagcaggaatgggactttt 32667328  T

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