View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_high_33 (Length: 260)
Name: NF20146_high_33
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_high_33 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 27526804 - 27526574
Alignment:
| Q |
18 |
gaaatggcccacaaactgaagtgaacaatatattcattttttgtcatccctccatttccaacctcaagcatgtcaggatctgttgagttaaaatgtttaa |
117 |
Q |
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| T |
27526804 |
gaaatggcccacaaactgaagtgaacaatatattcattttttgtcatccctccatttccaacctcaagcatgtcaggatctgttgagttaaaatatttaa |
27526705 |
T |
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| Q |
118 |
tgaatatcttgagtcataaattatatcatgaaatcaagatgcaaactcaattctttcacaaaaaattgttaaacaaatgaagttctaaccattccagcca |
217 |
Q |
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| T |
27526704 |
tgaatatcttgagtcataaattatatcatgaaatcaagatgcaaactcaattctttcacaaaaaattgttaaacaaatgaagttctaaccattccagcca |
27526605 |
T |
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| Q |
218 |
ccaggtcttgcatgctcggcataaacttcat |
248 |
Q |
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| T |
27526604 |
ccaggtcttgcatgctcggcataaacttcat |
27526574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 27532458 - 27532227
Alignment:
| Q |
18 |
gaaatggcccacaaactgaagtgaacaatatattcattttttgtcatccctccatttccaacctcaagcatgtcaggatctgttgagttaaaatgtttaa |
117 |
Q |
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| T |
27532458 |
gaaatggcccacaaactgaagtgaacgatatactcattttttgtcatccctccatttccaacctcaagcatatcaggatctgtcgagttagaatgtttaa |
27532359 |
T |
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| Q |
118 |
tgaatatcttgagtcataaattatatcatgaaatcaagatgcaaactcaat-tctttcacaaaaaattgttaaacaaatgaagttctaaccattccagcc |
216 |
Q |
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| T |
27532358 |
tgaataaatcgactcataaattgtatcatgaaatcaatatgcaaactcgatgtctttcacaaaaagttgttaaacaaatgaaattctaaccattccaacc |
27532259 |
T |
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| Q |
217 |
accaggtcttgcatgctcggcataaacttcat |
248 |
Q |
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| T |
27532258 |
accaggtcttgcaagctcagcataaacttcat |
27532227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 24883727 - 24883685
Alignment:
| Q |
58 |
ttgtcatccctccatttccaacctcaagcatgtcaggatctgt |
100 |
Q |
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| T |
24883727 |
ttgtcatacctccatttccaacttcaagcatgtcaggatctgt |
24883685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 32590219 - 32590259
Alignment:
| Q |
58 |
ttgtcatccctccatttccaacctcaagcatgtcaggatct |
98 |
Q |
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| T |
32590219 |
ttgtcatgcctccatttccaacttcaagcatatcaggatct |
32590259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 32600667 - 32600707
Alignment:
| Q |
58 |
ttgtcatccctccatttccaacctcaagcatgtcaggatct |
98 |
Q |
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| T |
32600667 |
ttgtcatgcctccatttccaacttcaagcatatcaggatct |
32600707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 34593815 - 34593853
Alignment:
| Q |
60 |
gtcatccctccatttccaacctcaagcatgtcaggatct |
98 |
Q |
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||||| |||||||| |||||||||||||||||||||||| |
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| T |
34593815 |
gtcatgcctccattcccaacctcaagcatgtcaggatct |
34593853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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