View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20146_high_4 (Length: 655)

Name: NF20146_high_4
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20146_high_4
NF20146_high_4
[»] chr1 (13 HSPs)
chr1 (154-581)||(42256076-42256506)
chr1 (18-118)||(42255978-42256078)
chr1 (533-581)||(9011642-9011691)
chr1 (534-581)||(29489384-29489432)
chr1 (532-581)||(18610769-18610819)
chr1 (535-572)||(30530608-30530646)
chr1 (415-460)||(907559-907604)
chr1 (536-572)||(34974783-34974820)
chr1 (534-581)||(6829808-6829856)
chr1 (534-581)||(26585198-26585246)
chr1 (532-572)||(36954667-36954706)
chr1 (533-572)||(40596077-40596117)
chr1 (533-572)||(50797788-50797828)
[»] chr3 (10 HSPs)
chr3 (417-535)||(52686356-52686474)
chr3 (441-533)||(38700716-38700808)
chr3 (533-581)||(8254024-8254073)
chr3 (536-581)||(11327108-11327154)
chr3 (532-572)||(7867745-7867786)
chr3 (533-581)||(30400181-30400230)
chr3 (415-460)||(30861855-30861900)
chr3 (533-581)||(36818953-36819002)
chr3 (533-573)||(49196693-49196734)
chr3 (533-572)||(43977016-43977056)
[»] chr5 (7 HSPs)
chr5 (415-527)||(40610014-40610128)
chr5 (403-521)||(16524068-16524186)
chr5 (535-581)||(35814452-35814499)
chr5 (529-572)||(125085-125129)
chr5 (534-581)||(14914370-14914418)
chr5 (536-572)||(20040789-20040825)
chr5 (428-468)||(34794601-34794641)
[»] chr8 (5 HSPs)
chr8 (415-535)||(36443245-36443365)
chr8 (536-572)||(6849295-6849332)
chr8 (529-569)||(44380651-44380692)
chr8 (534-581)||(41273513-41273561)
chr8 (534-581)||(41293746-41293794)
[»] chr4 (9 HSPs)
chr4 (401-493)||(18372358-18372449)
chr4 (471-535)||(27025606-27025670)
chr4 (401-456)||(18324080-18324134)
chr4 (534-581)||(8026778-8026826)
chr4 (533-572)||(18874956-18874995)
chr4 (536-581)||(18568840-18568886)
chr4 (532-581)||(44368227-44368277)
chr4 (533-581)||(3222986-3223035)
chr4 (533-581)||(5208352-5208401)
[»] chr7 (10 HSPs)
chr7 (531-581)||(116626-116677)
chr7 (536-581)||(2347084-2347130)
chr7 (531-581)||(33050178-33050229)
chr7 (414-455)||(24535475-24535516)
chr7 (533-581)||(30864442-30864491)
chr7 (534-581)||(4971288-4971336)
chr7 (530-581)||(37385258-37385310)
chr7 (529-572)||(37848086-37848130)
chr7 (534-581)||(44511137-44511185)
chr7 (537-572)||(46725618-46725654)
[»] chr6 (6 HSPs)
chr6 (533-581)||(3339524-3339573)
chr6 (415-530)||(14339428-14339542)
chr6 (534-572)||(30945821-30945860)
chr6 (532-581)||(27334854-27334904)
chr6 (532-581)||(27395594-27395644)
chr6 (533-572)||(15722537-15722577)
[»] chr2 (4 HSPs)
chr2 (532-572)||(4263887-4263927)
chr2 (534-581)||(35171251-35171299)
chr2 (532-581)||(27307256-27307306)
chr2 (534-581)||(14954624-14954672)


Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 154 - 581
Target Start/End: Original strand, 42256076 - 42256506
Alignment:
Q  154 actaaaaattgatcaagaagaaatgagcaatttttaaaaatgaggaactattttgatcgatgtcagaattttcgaagaccaatatgtctagacatttaaa 253  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  42256076 actaaaaattgatcaagaagaaatgagcaatttttaaaaattagggactattttgatcgatgtcagaattttcgaagaccaatatgtctaaacaattaaa 42256175  T
Q  254 ttactagcgatgacatggtaacttgtgagaaaagaaaagttattggtgtaacagtccaatgacatgattgttaactaaggtcgtgccaatatatatannn 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  42256176 ttactagcgatgacatggtaacttgtgagaaaagaaaagttattggtgtaacagtccaatgacatgattgttaactaaggtcgtgccaatatatata-tt 42256274  T
Q  354 nnnnggagccaaaatatatattttttggatggaccnnnnnnntaaac--atatatatatactc-aaatttattttttaataagcattaagcacaaagttg 450  Q
        |||||||||||||||||||||||||||||||       |||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42256275 ttttggagccaaaatatatattttttggatggaccaaaaaaataaacatatatatatatactcaaaatttattttttaataagcattaagcacaaagttg 42256374  T
Q  451 accataaaaatattaattggtatatcttgaaaattcaaaataaatatttacacacttcgattgacttgaaaatgtgataataaaagagaaatgatattta 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  42256375 accataaaaatattaattggtatatcttgaaaattcaaaataaatatttacacactttgattgacttgaaaatgtgataataaaagagaaatgatatttg 42256474  T
Q  551 tacaa-cattttgtgacaactttggtacaact 581  Q
    ||||| ||||||||||||||||||||||||||    
T  42256475 tacaaccattttgtgacaactttggtacaact 42256506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 42255978 - 42256078
Alignment:
Q  18 attaaagtgagatcaacatgtaatatgatatgtccaattaacacgtcatgtcaaaatctctaacaataaaagttaacacaggaacaattgtgaacattac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42255978 attaaagtgagatcaacatgtaatatgatatgtccaattaacacgtcatgtcaaaatctctaacaataaaagttaacacaggaataattgtgaacattac 42256077  T
Q  118 t 118  Q
    |    
T  42256078 t 42256078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 533 - 581
Target Start/End: Original strand, 9011642 - 9011691
Alignment:
Q  533 aaagagaaatgatatttatacaac-attttgtgacaactttggtacaact 581  Q
    ||||||||||||||||| |||||| ||||||||||||||||| |||||||    
T  9011642 aaagagaaatgatatttgtacaaccattttgtgacaactttgatacaact 9011691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 581
Target Start/End: Complemental strand, 29489432 - 29489384
Alignment:
Q  534 aagagaaatgatatttatacaac-attttgtgacaactttggtacaact 581  Q
    |||||||||||||||| |||||| ||||||||| |||||||||||||||    
T  29489432 aagagaaatgatatttgtacaaccattttgtgataactttggtacaact 29489384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 532 - 581
Target Start/End: Original strand, 18610769 - 18610819
Alignment:
Q  532 aaaagagaaatgatatttatacaac-attttgtgacaactttggtacaact 581  Q
    |||||||||||||||||| |||||| ||||||||||||||||  |||||||    
T  18610769 aaaagagaaatgatatttgtacaactattttgtgacaacttttttacaact 18610819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 30530646 - 30530608
Alignment:
Q  535 agagaaatgatatttatacaa-cattttgtgacaacttt 572  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  30530646 agagaaatgatatttatacaaccattttgtgacaacttt 30530608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 460
Target Start/End: Complemental strand, 907604 - 907559
Alignment:
Q  415 aaatttattttttaataagcattaagcacaaagttgaccataaaaa 460  Q
    |||||||| |||||||||||||||| ||||||||| || |||||||    
T  907604 aaatttatgttttaataagcattaaacacaaagttaacaataaaaa 907559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 572
Target Start/End: Complemental strand, 34974820 - 34974783
Alignment:
Q  536 gagaaatgatatttatacaa-cattttgtgacaacttt 572  Q
    |||||||||||||||||||| |||||||||||||||||    
T  34974820 gagaaatgatatttatacaaccattttgtgacaacttt 34974783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 581
Target Start/End: Complemental strand, 6829856 - 6829808
Alignment:
Q  534 aagagaaatgatatttatacaac-attttgtgacaactttggtacaact 581  Q
    |||||||||||||||| |||||| | |||||||||||||| ||||||||    
T  6829856 aagagaaatgatatttgtacaactaatttgtgacaacttttgtacaact 6829808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 581
Target Start/End: Complemental strand, 26585246 - 26585198
Alignment:
Q  534 aagagaaatgatatttatacaac-attttgtgacaactttggtacaact 581  Q
    |||||||||||||||| |||||| ||||||||| |||||| ||||||||    
T  26585246 aagagaaatgatatttgtacaactattttgtgataacttttgtacaact 26585198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 532 - 572
Target Start/End: Original strand, 36954667 - 36954706
Alignment:
Q  532 aaaagagaaatgatatttatacaacattttgtgacaacttt 572  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  36954667 aaaagagaaatgatatttgtacaacatttt-tgacaacttt 36954706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 572
Target Start/End: Complemental strand, 40596117 - 40596077
Alignment:
Q  533 aaagagaaatgatatttatacaa-cattttgtgacaacttt 572  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  40596117 aaagagaaatgatatttgtacaaccattttgtgacaacttt 40596077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 572
Target Start/End: Original strand, 50797788 - 50797828
Alignment:
Q  533 aaagagaaatgatatttatacaa-cattttgtgacaacttt 572  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  50797788 aaagagaaatgatatttgtacaatcattttgtgacaacttt 50797828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 417 - 535
Target Start/End: Complemental strand, 52686474 - 52686356
Alignment:
Q  417 atttattttttaataagcattaagcacaaagttgaccataaaaatattaattggtatatcttgaaaattcaaaataaatatttacacacttcgattgact 516  Q
    |||||| ||||||||||||||||||||||| |||||||| |||| ||||| |  |||| ||| |||||||||||||| ||| |||||| ||| |||||||    
T  52686474 atttatgttttaataagcattaagcacaaaattgaccatcaaaaaattaaattttataccttaaaaattcaaaataattatctacacatttcaattgact 52686375  T
Q  517 tgaaaatgtgataataaaa 535  Q
    ||||| | ||||| |||||    
T  52686374 tgaaagtttgatagtaaaa 52686356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 441 - 533
Target Start/End: Complemental strand, 38700808 - 38700716
Alignment:
Q  441 cacaaagttgaccataaaaatattaattggtatatcttgaaaattcaaaataaatatttacacacttcgattgacttgaaaatgtgataataa 533  Q
    ||||||||||||||| |||| ||||||| | ||| ||| |||||||||||||| ||| || ||| ||||| |||||||||| |||||||||||    
T  38700808 cacaaagttgaccatcaaaaaattaatttgcataccttaaaaattcaaaataattatctatacatttcgaatgacttgaaagtgtgataataa 38700716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 533 - 581
Target Start/End: Original strand, 8254024 - 8254073
Alignment:
Q  533 aaagagaaatgatatttatacaac-attttgtgacaactttggtacaact 581  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  8254024 aaagagaaatgatatttgtacaaccattttgtgacaactttggtacaact 8254073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 536 - 581
Target Start/End: Original strand, 11327108 - 11327154
Alignment:
Q  536 gagaaatgatatttatacaac-attttgtgacaactttggtacaact 581  Q
    |||||||||||||| |||||| |||||||||||||||| ||||||||    
T  11327108 gagaaatgatatttgtacaaccattttgtgacaacttttgtacaact 11327154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 532 - 572
Target Start/End: Complemental strand, 7867786 - 7867745
Alignment:
Q  532 aaaagagaaatgatatttatacaac-attttgtgacaacttt 572  Q
    |||||||||||||||||| |||||| ||||||||||||||||    
T  7867786 aaaagagaaatgatatttgtacaactattttgtgacaacttt 7867745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 581
Target Start/End: Complemental strand, 30400230 - 30400181
Alignment:
Q  533 aaagagaaatgatatttatacaac-attttgtgacaactttggtacaact 581  Q
    ||||||||||||||||| |||||| | |||||||||||||| ||||||||    
T  30400230 aaagagaaatgatatttgtacaacaaatttgtgacaacttttgtacaact 30400181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 460
Target Start/End: Original strand, 30861855 - 30861900
Alignment:
Q  415 aaatttattttttaataagcattaagcacaaagttgaccataaaaa 460  Q
    |||||||  ||||||||||||||||| ||||| |||||||||||||    
T  30861855 aaatttaagttttaataagcattaagaacaaaattgaccataaaaa 30861900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 581
Target Start/End: Original strand, 36818953 - 36819002
Alignment:
Q  533 aaagagaaatgatatttatacaa-cattttgtgacaactttggtacaact 581  Q
    ||||||||||||||||| ||||| || |||||||||||||| ||||||||    
T  36818953 aaagagaaatgatatttgtacaaccaatttgtgacaacttttgtacaact 36819002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 49196693 - 49196734
Alignment:
Q  533 aaagagaaatgatatttatacaa-cattttgtgacaactttg 573  Q
    ||||||||||||||||| ||||| ||||||||||||||||||    
T  49196693 aaagagaaatgatatttgtacaaccattttgtgacaactttg 49196734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 572
Target Start/End: Original strand, 43977016 - 43977056
Alignment:
Q  533 aaagagaaatgatatttatacaac-attttgtgacaacttt 572  Q
    |||||||||| ||||||||||||| ||||||||||||||||    
T  43977016 aaagagaaattatatttatacaactattttgtgacaacttt 43977056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 415 - 527
Target Start/End: Complemental strand, 40610128 - 40610014
Alignment:
Q  415 aaatttattttttaataagcattaagcacaaagttgaccataaaa--atattaattggtatatcttgaaaattcaaaataaatatttacacacttcgatt 512  Q
    |||||||||||||||| ||||||||||||||||| || |||||||  | ||||| | ||||  |||  |||||| ||||||||||||||||||||  |||    
T  40610128 aaatttattttttaattagcattaagcacaaagtggatcataaaacaaaattaaattgtatgccttacaaattccaaataaatatttacacactttaatt 40610029  T
Q  513 gacttgaaaatgtga 527  Q
    ||||| ||| |||||    
T  40610028 gacttaaaagtgtga 40610014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 521
Target Start/End: Complemental strand, 16524186 - 16524068
Alignment:
Q  403 atatatatactcaaatttattttttaataagcattaagcacaaagttgaccataaaaatattaattggtatatcttgaaaattcaaaataaatatttaca 502  Q
    |||| ||||| |||| |||| |||||||||||||||| || |||||||| ||| ||||  |||| | ||||| ||| |||||||||||| | ||| ||||    
T  16524186 atatttatacacaaacttatgttttaataagcattaaacataaagttgatcatcaaaaagttaaattgtataccttaaaaattcaaaattattatctaca 16524087  T
Q  503 cacttcgattgacttgaaa 521  Q
     | || |||| ||||||||    
T  16524086 tattttgattaacttgaaa 16524068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 535 - 581
Target Start/End: Original strand, 35814452 - 35814499
Alignment:
Q  535 agagaaatgatatttatacaac-attttgtgacaactttggtacaact 581  Q
    ||||||||||||||| |||||| ||||||||| |||||||||||||||    
T  35814452 agagaaatgatatttgtacaaccattttgtgataactttggtacaact 35814499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 529 - 572
Target Start/End: Original strand, 125085 - 125129
Alignment:
Q  529 aataaaagagaaatgatatttatacaac-attttgtgacaacttt 572  Q
    ||||||||||||||||||||| |||||| | ||||||||||||||    
T  125085 aataaaagagaaatgatatttgtacaactactttgtgacaacttt 125129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 581
Target Start/End: Original strand, 14914370 - 14914418
Alignment:
Q  534 aagagaaatgatatttatacaa-cattttgtgacaactttggtacaact 581  Q
    |||||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  14914370 aagagaaatgatatttgtacaaccattttgtgacaacttttggacaact 14914418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 572
Target Start/End: Original strand, 20040789 - 20040825
Alignment:
Q  536 gagaaatgatatttatacaacattttgtgacaacttt 572  Q
    |||||||||||||| |||||||||| |||||||||||    
T  20040789 gagaaatgatatttgtacaacatttagtgacaacttt 20040825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 468
Target Start/End: Complemental strand, 34794641 - 34794601
Alignment:
Q  428 aataagcattaagcacaaagttgaccataaaaatattaatt 468  Q
    ||||| |||||||||||||||| |||||||||| |||||||    
T  34794641 aataatcattaagcacaaagttaaccataaaaaaattaatt 34794601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 415 - 535
Target Start/End: Complemental strand, 36443365 - 36443245
Alignment:
Q  415 aaatttattttttaataagcattaagcacaaagttgaccataaaaatattaattggtatatcttgaaaattcaaaataaatatttacacacttcgattga 514  Q
    |||||||| || |||||| ||||||  | ||  |||||||| |||| ||||| | ||||| ||| |||||||||||||| ||| ||  || |||||||||    
T  36443365 aaatttatgttataataaacattaaatataagattgaccatcaaaaaattaaattgtataccttaaaaattcaaaataattatctatgcatttcgattga 36443266  T
Q  515 cttgaaaatgtgataataaaa 535  Q
    ||||||| |||||||||||||    
T  36443265 cttgaaattgtgataataaaa 36443245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 572
Target Start/End: Complemental strand, 6849332 - 6849295
Alignment:
Q  536 gagaaatgatatttatacaa-cattttgtgacaacttt 572  Q
    |||||||||||||||||||| |||||||||||||||||    
T  6849332 gagaaatgatatttatacaaccattttgtgacaacttt 6849295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 569
Target Start/End: Complemental strand, 44380692 - 44380651
Alignment:
Q  529 aataaaagagaaatgatatttatacaa-cattttgtgacaac 569  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  44380692 aataaaagagaaatgatatttgtacaaccattttgtgacaac 44380651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 581
Target Start/End: Original strand, 41273513 - 41273561
Alignment:
Q  534 aagagaaatgatatttatacaa-cattttgtgacaactttggtacaact 581  Q
    |||||||||||||||| ||||| || |||||||||||||| ||||||||    
T  41273513 aagagaaatgatatttgtacaaacaatttgtgacaacttttgtacaact 41273561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 581
Target Start/End: Complemental strand, 41293794 - 41293746
Alignment:
Q  534 aagagaaatgatatttatacaac-attttgtgacaactttggtacaact 581  Q
    |||||||||||||||| |||||| | |||||||||||||| ||||||||    
T  41293794 aagagaaatgatatttttacaaccaatttgtgacaacttttgtacaact 41293746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 401 - 493
Target Start/End: Complemental strand, 18372449 - 18372358
Alignment:
Q  401 atatatatatactcaaatttattttttaataagcattaagcacaaagttgaccataaaaatattaattggtatatcttgaaaattcaaaataa 493  Q
    ||||||||||||  |||||||| ||||||||||||| |||||||||||||||||| |||| || || |  |||| ||| ||||||||||||||    
T  18372449 atatatatataca-aaatttatattttaataagcatcaagcacaaagttgaccatcaaaaaataaagttatataccttaaaaattcaaaataa 18372358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 471 - 535
Target Start/End: Complemental strand, 27025670 - 27025606
Alignment:
Q  471 tatatcttgaaaattcaaaataaatatttacacacttcgattgacttgaaaatgtgataataaaa 535  Q
    |||| |||||||||||||||||| |||||||||| || || |||||||||||||||||| |||||    
T  27025670 tataccttgaaaattcaaaataattatttacacattttgaatgacttgaaaatgtgatattaaaa 27025606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 401 - 456
Target Start/End: Original strand, 18324080 - 18324134
Alignment:
Q  401 atatatatatactcaaatttattttttaataagcattaagcacaaagttgaccata 456  Q
    ||||||||||||  |||||||| ||||||||||||| |||||||||||||||||||    
T  18324080 atatatatataca-aaatttatattttaataagcatcaagcacaaagttgaccata 18324134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 581
Target Start/End: Complemental strand, 8026826 - 8026778
Alignment:
Q  534 aagagaaatgatatttatacaa-cattttgtgacaactttggtacaact 581  Q
    |||||||||||||||||||||| || |||||||||||||| ||||||||    
T  8026826 aagagaaatgatatttatacaatcaatttgtgacaacttttgtacaact 8026778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 533 - 572
Target Start/End: Complemental strand, 18874995 - 18874956
Alignment:
Q  533 aaagagaaatgatatttatacaacattttgtgacaacttt 572  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  18874995 aaagagaaatgatatttgtacaacattttttgacaacttt 18874956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 536 - 581
Target Start/End: Complemental strand, 18568886 - 18568840
Alignment:
Q  536 gagaaatgatatttatacaa-cattttgtgacaactttggtacaact 581  Q
    |||||||||||||||||||| ||||||||||||||||| | ||||||    
T  18568886 gagaaatgatatttatacaaccattttgtgacaacttttggacaact 18568840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 532 - 581
Target Start/End: Complemental strand, 44368277 - 44368227
Alignment:
Q  532 aaaagagaaatgatatttatacaa-cattttgtgacaactttggtacaact 581  Q
    |||||||||||||||||| ||||| || |||||||||||||| ||||||||    
T  44368277 aaaagagaaatgatatttgtacaatcaatttgtgacaacttttgtacaact 44368227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 581
Target Start/End: Original strand, 3222986 - 3223035
Alignment:
Q  533 aaagagaaatgatatttatacaa-cattttgtgacaactttggtacaact 581  Q
    ||||||||||||||||| ||||| || |||||||||||||| ||||||||    
T  3222986 aaagagaaatgatatttgtacaatcaatttgtgacaacttttgtacaact 3223035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 581
Target Start/End: Complemental strand, 5208401 - 5208352
Alignment:
Q  533 aaagagaaatgatatttatacaa-cattttgtgacaactttggtacaact 581  Q
    ||||||||||||||||| ||||| || |||||||||||||| ||||||||    
T  5208401 aaagagaaatgatatttgtacaaccaatttgtgacaacttttgtacaact 5208352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 531 - 581
Target Start/End: Original strand, 116626 - 116677
Alignment:
Q  531 taaaagagaaatgatatttatacaac-attttgtgacaactttggtacaact 581  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  116626 taaaagagaaatgatatttatacaactattttgtgccaactttggtacaact 116677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 536 - 581
Target Start/End: Complemental strand, 2347130 - 2347084
Alignment:
Q  536 gagaaatgatatttatacaac-attttgtgacaactttggtacaact 581  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||    
T  2347130 gagaaatgatatttgtacaaccattttgtgacaactttggtacaact 2347084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 531 - 581
Target Start/End: Original strand, 33050178 - 33050229
Alignment:
Q  531 taaaagagaaatgatatttatacaac-attttgtgacaactttggtacaact 581  Q
    |||| |||||||||||||| |||||| |||||||||||||||| ||||||||    
T  33050178 taaatgagaaatgatatttgtacaaccattttgtgacaacttttgtacaact 33050229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 24535516 - 24535475
Alignment:
Q  414 caaatttattttttaataagcattaagcacaaagttgaccat 455  Q
    ||||||||| |||||||||||||||| ||||||||| |||||    
T  24535516 caaatttatgttttaataagcattaaacacaaagtttaccat 24535475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 581
Target Start/End: Complemental strand, 30864491 - 30864442
Alignment:
Q  533 aaagagaaatgatatttatacaa-cattttgtgacaactttggtacaact 581  Q
    ||||||||||||||||| ||||| || |||||||||||||| ||||||||    
T  30864491 aaagagaaatgatatttgtacaaccaatttgtgacaacttttgtacaact 30864442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 581
Target Start/End: Original strand, 4971288 - 4971336
Alignment:
Q  534 aagagaaatgatatttatacaa-cattttgtgacaactttggtacaact 581  Q
    |||||||||||||||| ||||| |||||||||||||||||  |||||||    
T  4971288 aagagaaatgatatttgtacaaccattttgtgacaacttttatacaact 4971336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 530 - 581
Target Start/End: Complemental strand, 37385310 - 37385258
Alignment:
Q  530 ataaaagagaaatgatatttatacaac-attttgtgacaactttggtacaact 581  Q
    |||||||| ||||||||||| |||||| ||||| |||||||||| ||||||||    
T  37385310 ataaaagataaatgatatttgtacaactattttttgacaacttttgtacaact 37385258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 529 - 572
Target Start/End: Original strand, 37848086 - 37848130
Alignment:
Q  529 aataaaagagaaatgatatttatacaac-attttgtgacaacttt 572  Q
    ||||||||||||||||||| |||||||| |||||| |||||||||    
T  37848086 aataaaagagaaatgatatctatacaactattttgcgacaacttt 37848130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 581
Target Start/End: Original strand, 44511137 - 44511185
Alignment:
Q  534 aagagaaatgatatttatacaac-attttgtgacaactttggtacaact 581  Q
    |||||||||||||||  |||||| |||||||||||||||| ||||||||    
T  44511137 aagagaaatgatattcgtacaaccattttgtgacaacttttgtacaact 44511185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 572
Target Start/End: Original strand, 46725618 - 46725654
Alignment:
Q  537 agaaatgatatttatacaac-attttgtgacaacttt 572  Q
    |||||||||||||||||||| ||||||||||||||||    
T  46725618 agaaatgatatttatacaactattttgtgacaacttt 46725654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 533 - 581
Target Start/End: Complemental strand, 3339573 - 3339524
Alignment:
Q  533 aaagagaaatgatatttatacaac-attttgtgacaactttggtacaact 581  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||||||||    
T  3339573 aaagagaaatgatatttgtacaaccattttgtgacaacttttgtacaact 3339524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 530
Target Start/End: Complemental strand, 14339542 - 14339428
Alignment:
Q  415 aaatttattttttaataagcattaagcacaaagttgaccataaaaatattaattggtatatcttgaaaattcaaaataaatatttacacacttcgattga 514  Q
    |||||||| || |||||| |||||| || ||  ||| ||||||||| || ||||| |||| ||| ||||| ||| |||| ||| || ||| |||||||||    
T  14339542 aaatttatgttataataaacattaaacaaaagattgtccataaaaaaataaattg-tataccttaaaaatacaagataattatctatacatttcgattga 14339444  T
Q  515 cttgaaaatgtgataa 530  Q
    ||||||| ||||||||    
T  14339443 cttgaaattgtgataa 14339428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 572
Target Start/End: Original strand, 30945821 - 30945860
Alignment:
Q  534 aagagaaatgatatttatacaa-cattttgtgacaacttt 572  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  30945821 aagagaaatgatatttatacaatcattttgtgacaacttt 30945860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 532 - 581
Target Start/End: Original strand, 27334854 - 27334904
Alignment:
Q  532 aaaagagaaatgatatttatacaac-attttgtgacaactttggtacaact 581  Q
    |||||||||||||||||| |||||| |||||||||||||||| ||| ||||    
T  27334854 aaaagagaaatgatatttgtacaactattttgtgacaacttttgtataact 27334904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 532 - 581
Target Start/End: Original strand, 27395594 - 27395644
Alignment:
Q  532 aaaagagaaatgatatttatacaac-attttgtgacaactttggtacaact 581  Q
    |||||||||||||||||| |||||| |||||||||||||||| ||| ||||    
T  27395594 aaaagagaaatgatatttgtacaactattttgtgacaacttttgtataact 27395644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 572
Target Start/End: Complemental strand, 15722577 - 15722537
Alignment:
Q  533 aaagagaaatgatatttatacaa-cattttgtgacaacttt 572  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  15722577 aaagagaaatgatatttgtacaatcattttgtgacaacttt 15722537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 532 - 572
Target Start/End: Complemental strand, 4263927 - 4263887
Alignment:
Q  532 aaaagagaaatgatatttatacaacattttgtgacaacttt 572  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  4263927 aaaagagaaatgatatttgtacaacattttttgacaacttt 4263887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 581
Target Start/End: Complemental strand, 35171299 - 35171251
Alignment:
Q  534 aagagaaatgatatttatacaac-attttgtgacaactttggtacaact 581  Q
    |||||||||||||||| |||||| |||||||||||| ||||||||||||    
T  35171299 aagagaaatgatatttgtacaaccattttgtgacaattttggtacaact 35171251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 532 - 581
Target Start/End: Complemental strand, 27307306 - 27307256
Alignment:
Q  532 aaaagagaaatgatatttatacaa-cattttgtgacaactttggtacaact 581  Q
    |||||||||||||||||| ||||| || |||||||||||||| ||||||||    
T  27307306 aaaagagaaatgatatttgtacaatcaatttgtgacaacttttgtacaact 27307256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 581
Target Start/End: Complemental strand, 14954672 - 14954624
Alignment:
Q  534 aagagaaatgatatttataca-acattttgtgacaactttggtacaact 581  Q
    |||||||||||||||| |||| |||||||||||||||||| | ||||||    
T  14954672 aagagaaatgatatttgtacatacattttgtgacaacttttgaacaact 14954624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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