View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_high_43 (Length: 236)
Name: NF20146_high_43
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_high_43 |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 72 - 236
Target Start/End: Complemental strand, 2856114 - 2855950
Alignment:
| Q |
72 |
ctaatcaacacaatctattttccataatttttacaaattcaatgaaatcaattcttccatcttgatttgcatcaaaattcttaatcatcttctgacaatt |
171 |
Q |
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| T |
2856114 |
ctaatcaacacaatctattttccataatttttacaaattcaatgaaatcaattcttccatcttgatttgcatcaaaattcttaatcatcttctgacaatt |
2856015 |
T |
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| Q |
172 |
ctcaacttctgaaccttccttaaatcccaaaatacacataactcttttcaactccattgcatcaa |
236 |
Q |
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| T |
2856014 |
ctcaacttccgaaccttccttaaatcccaaaatacacataactcttttcaactccattgcatcaa |
2855950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 80 - 236
Target Start/End: Complemental strand, 2852003 - 2851858
Alignment:
| Q |
80 |
cacaatctattttccataatttttacaaattcaatgaaatcaattcttccatcttgatttgcatcaaaattcttaatcatcttctgacaattctcaactt |
179 |
Q |
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| T |
2852003 |
cacaatatgttttccataatcattacaaattcgattaagtcaattctttcatcatgattttcatcgaaattcttgat-----------aattttcaactt |
2851915 |
T |
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| Q |
180 |
ctgaaccttccttaaatcccaaaatacacataactcttttcaactccattgcatcaa |
236 |
Q |
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| T |
2851914 |
ctaaaccttccttaaatcccaaaatacacataactctttgcaactccattgcatcaa |
2851858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 74 - 236
Target Start/End: Complemental strand, 10478031 - 10477869
Alignment:
| Q |
74 |
aatcaacacaatctattttccataatttttacaaattcaatgaaatcaattcttccatcttgatttgcatcaaaattcttaatcatcttctgacaattct |
173 |
Q |
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| T |
10478031 |
aatcaacacaatctgttttccataatttttacaaattcagtgaaatcaattcttccatcttggttttcatcaaaattcttgatcatcttctgacaattct |
10477932 |
T |
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| Q |
174 |
caacttctgaaccttccttaaatcccaaaatacacataactcttttcaactccattgcatcaa |
236 |
Q |
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| T |
10477931 |
taacttctaaaccttcattcaatcccaaaatacacataactctttgcaattcctttgcatcaa |
10477869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 134 - 236
Target Start/End: Complemental strand, 8216341 - 8216239
Alignment:
| Q |
134 |
tgatttgcatcaaaattcttaatcatcttctgacaattctcaacttctgaaccttccttaaatcccaaaatacacataactcttttcaactccattgcat |
233 |
Q |
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| T |
8216341 |
tgatttgcatcaaaattcttaatcatcttctgacaattctcaacttctgaaccttccttaaatcccaaaatacacataacatttttcaactccattgaat |
8216242 |
T |
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| Q |
234 |
caa |
236 |
Q |
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| T |
8216241 |
caa |
8216239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 236
Target Start/End: Original strand, 52971084 - 52971231
Alignment:
| Q |
89 |
ttttccataatttttacaaattcaatgaaatcaattcttccatcttgatttgcatcaaaattcttaatcatcttctgacaattctcaacttctgaacctt |
188 |
Q |
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|||| |||||| |||||||| |||||||||||||||||||||||||||||| |||||||| | | |||||||| || || ||||||| |||||| |||| |
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| T |
52971084 |
tttttcataatatttacaaactcaatgaaatcaattcttccatcttgattttcatcaaaaattgtgatcatcttttggcagttctcaaattctgatcctt |
52971183 |
T |
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| Q |
189 |
ccttaaatcccaaaatacacataactcttttcaactccattgcatcaa |
236 |
Q |
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| T |
52971184 |
gtttcaatcccaaaataacaagaactctttgcaactcctttgcatcaa |
52971231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 188
Target Start/End: Original strand, 52967211 - 52967292
Alignment:
| Q |
106 |
aaattcaatgaaatcaattcttccatcttgatttgcatcaaaattcttaatcatcttctgacaattctcaacttctgaacctt |
188 |
Q |
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| T |
52967211 |
aaattcaatgat-tcaattctttcatcttgattttcatcaaaattcttgataatcttttgacatttctcaaattctgatcctt |
52967292 |
T |
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