View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_high_48 (Length: 225)
Name: NF20146_high_48
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_high_48 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 28283021 - 28282831
Alignment:
| Q |
18 |
tagattgataaaattaaaactgatcaggtgaatatacatttagatcttataatgtataagatctaagtttcaacttgcttcaagagtccttaataaagct |
117 |
Q |
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| T |
28283021 |
tagattgataaaattaaaactgatcaggtgaatatacatttagatcttataatgtataagatctaagtttcaacttgcttcaagagtccttaataaagct |
28282922 |
T |
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| Q |
118 |
aagcaagatattagaattcaatatactagtggaacagtattagtgataaagagatgcaatgacatctctgaccaaagggcgaggctaccac |
208 |
Q |
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| T |
28282921 |
aagcaagatattagaattcaatatactagtggaacagtattagtgataaagagatgcaatgacatctctgaccaaagggcgaggctaccac |
28282831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 28304843 - 28304776
Alignment:
| Q |
52 |
tacatttagatcttataatgtataagatctaagtttcaacttgcttcaagagtccttaataaagctaa |
119 |
Q |
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| T |
28304843 |
tacatttacaccttatgatgtgtaagatatgagtttcaactcgcttcaagagtcattaataaagctaa |
28304776 |
T |
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