View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_high_49 (Length: 222)
Name: NF20146_high_49
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 42255978 - 42256078
Alignment:
| Q |
18 |
attaaagtgagatcaacatgtaatatgatatgtccaattaacacgtcatgtcaaaatctctaacaataaaagttaacacaggaacaattgtgaacattac |
117 |
Q |
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| T |
42255978 |
attaaagtgagatcaacatgtaatatgatatgtccaattaacacgtcatgtcaaaatctctaacaataaaagttaacacaggaataattgtgaacattac |
42256077 |
T |
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| Q |
118 |
t |
118 |
Q |
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| T |
42256078 |
t |
42256078 |
T |
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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 42256076 - 42256129
Alignment:
| Q |
154 |
actaaaaattgatcaagaagaaatgagcaatttttaaaaatgaggaactatttt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
42256076 |
actaaaaattgatcaagaagaaatgagcaatttttaaaaattagggactatttt |
42256129 |
T |
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