View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_high_50 (Length: 222)
Name: NF20146_high_50
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_high_50 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 43402264 - 43402065
Alignment:
| Q |
9 |
tagattattctcattttttgtatatcaaacattagcattctttaaccgtagcctatactaacatgttactgataatatttctgattcacaaaacccctcc |
108 |
Q |
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| T |
43402264 |
tagatttttctcattttttgtatatcaaacattagcattctttaaccgtagcctatactaacatgttactgacaatatttctgattcacaaaacccctcc |
43402165 |
T |
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| Q |
109 |
ccactgattgnnnnnnncaaactaagacagtggaaatatatgtaaggatgtgatttctgattgacagtggaaattagatggttcattttaccaacctttt |
208 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43402164 |
ccactgattgaaaaaaacaaactaaaacagtggaaatatatgtaaggatgtgatttctgattgacagtggaaattagatggttcattttaccaacctttt |
43402065 |
T |
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