View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20146_high_6 (Length: 592)
Name: NF20146_high_6
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 12 - 357
Target Start/End: Original strand, 27468306 - 27468651
Alignment:
| Q |
12 |
ccaagaaaatatggaaccttcttcgcaaattactggtactttcatcaggaaaaagatgaatatgaaatgaaaaggagattaatcaacaaaataaagacta |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27468306 |
ccaacaaaatatggaaccttcttcgcaaattactggtactttcatcaggcaaaagatgaatatgaaatgaaaaggagattaatcaacaaaataaagacta |
27468405 |
T |
|
| Q |
112 |
actgaatctgnnnnnnntaataatgaaggatgcaaagactttacaaggcatgttcatagtacggacttgaagacaacaaatagagtatgcaatatgctta |
211 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27468406 |
actgaatctaaaaaaataaataatgaaggatgcaaagactttacaaggcatgttcatagtacggacttgaagacaacaaataaagtatgcaatatgctta |
27468505 |
T |
|
| Q |
212 |
taatagaggatctatcaaatctatcaatctaaaatacatctaggaggaaagaaagggtacgcaccaatctccagaaacatagttggcttatttgtcagtg |
311 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27468506 |
taatagaggatgtatcaaatctatcaatctaaaatacatctaggaggaaagaaagagtacgcaccaatctccagaaacatagttggcttatttgtcattg |
27468605 |
T |
|
| Q |
312 |
gtccatgatgagtggcttctaaagtaatctaaatcgagggaacaca |
357 |
Q |
| |
|
|||||||||||||||| || | |||||||||||| |||| |||||| |
|
|
| T |
27468606 |
gtccatgatgagtggcctccagagtaatctaaattgaggaaacaca |
27468651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 387 - 489
Target Start/End: Original strand, 27468860 - 27468959
Alignment:
| Q |
387 |
atccatgtattcacagaaatattgaaaacataaagcataagtacctaagatataacaagaaaacaaaaggctaattagttaaaagcaaaaaaccttcaca |
486 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||| | |||||| | ||||| ||| |||| |||||||| |||| |||||||||||||||| ||||| |
|
|
| T |
27468860 |
atccatgtatttgcagaaatattcaaaacataaagtaaaagtacttcagataaaactagaacacaaaaggataat---ttaaaagcaaaaaaccatcaca |
27468956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University