View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20146_low_11 (Length: 496)
Name: NF20146_low_11
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 347
Target Start/End: Original strand, 30604024 - 30604347
Alignment:
| Q |
16 |
ctatgatcaatggattttgcttgagaaacttgaccaatgatgctttgaaattgatttcaaaaatgaaagagaatggttgcaacctggatgcagttacata |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||| ||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30604024 |
ctatgatcaatggattctgcttgagaaaattgatcaatgatgctttgaaattgtttccaaaaatgaaagagaatggttgcaacccggatgcagttacata |
30604123 |
T |
|
| Q |
116 |
tgaaacaaccatccactcactttttaataacaatgaagatgaaaaggcagagaaacttctctgtgaaatgatttccaatggtttactctaagatgaagaa |
215 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30604124 |
taaaacaaccatccactcactttttaataacaatgaagatgaaaaggcagagaaact--tatgtgaaatgatttccaatggtttactctaagatgaagaa |
30604221 |
T |
|
| Q |
216 |
gatggagaaacttgccacttcaa-aagttatccacctatttctcttttcctttatattttacctaaatggaatgacattccttcactgcttatgtaaatt |
314 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30604222 |
gatggagaaacttgccatttcaagaatttatccacctatttctcttttcctttatattttacctaaatggaatgacattctttcactgcttatgt----- |
30604316 |
T |
|
| Q |
315 |
gcaaattgcagctctatgtacttgattttgcaa |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
30604317 |
--aaattgcagctctatgtacttgattttgcaa |
30604347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 397 - 464
Target Start/End: Original strand, 30605217 - 30605284
Alignment:
| Q |
397 |
caaataattgtaacctcaactgtaattctgatcctctacattggaaatggaggtgtttgaacataagt |
464 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30605217 |
caaataattgtaacctcaactgtaattttgatcctctacattggaaatggaggtgtttgaacagaagt |
30605284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 344 - 400
Target Start/End: Original strand, 30604380 - 30604436
Alignment:
| Q |
344 |
gcaacaaaagaagatgaacctttacatcggttttgttcaaacaagaatcaaaacaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30604380 |
gcaacaaaagaagatgaacctttacatcggttttgttcaaacaaaaatcaaaacaaa |
30604436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University