View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20146_low_12 (Length: 481)

Name: NF20146_low_12
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20146_low_12
NF20146_low_12
[»] chr7 (9 HSPs)
chr7 (20-470)||(33130207-33130657)
chr7 (218-340)||(36107063-36107185)
chr7 (218-340)||(41986723-41986845)
chr7 (292-333)||(37633176-37633217)
chr7 (20-76)||(24685232-24685288)
chr7 (118-160)||(8805055-8805097)
chr7 (22-75)||(44524231-44524284)
chr7 (264-332)||(10461632-10461700)
chr7 (218-346)||(40210620-40210748)
[»] chr8 (15 HSPs)
chr8 (218-340)||(31628156-31628278)
chr8 (22-75)||(36700644-36700697)
chr8 (36-76)||(10329594-10329634)
chr8 (20-76)||(37675094-37675150)
chr8 (245-332)||(30233473-30233560)
chr8 (218-332)||(15004167-15004281)
chr8 (218-328)||(21467810-21467920)
chr8 (22-76)||(23443184-23443238)
chr8 (22-76)||(30233227-30233281)
chr8 (22-76)||(41492720-41492774)
chr8 (22-75)||(9994963-9995016)
chr8 (263-332)||(22343013-22343082)
chr8 (263-332)||(22354673-22354742)
chr8 (222-290)||(13248089-13248157)
chr8 (36-72)||(43595484-43595520)
[»] chr2 (13 HSPs)
chr2 (221-332)||(8423872-8423983)
chr2 (262-317)||(40439287-40439342)
chr2 (218-288)||(13369808-13369878)
chr2 (218-288)||(18890618-18890688)
chr2 (25-75)||(20464278-20464328)
chr2 (218-340)||(30357447-30357569)
chr2 (218-340)||(34899174-34899296)
chr2 (22-75)||(13369578-13369631)
chr2 (22-75)||(24936277-24936330)
chr2 (22-75)||(25684961-25685014)
chr2 (36-76)||(17206056-17206096)
chr2 (36-76)||(17241739-17241779)
chr2 (36-76)||(19206016-19206056)
[»] scaffold0688 (4 HSPs)
scaffold0688 (218-288)||(2763-2833)
scaffold0688 (218-288)||(4430-4500)
scaffold0688 (26-75)||(2516-2565)
scaffold0688 (26-75)||(4188-4237)
[»] chr6 (4 HSPs)
chr6 (218-332)||(24496305-24496418)
chr6 (22-75)||(9606177-9606230)
chr6 (22-75)||(31261369-31261422)
chr6 (25-75)||(24496083-24496133)
[»] chr3 (7 HSPs)
chr3 (218-340)||(48432541-48432663)
chr3 (25-76)||(28700016-28700067)
chr3 (218-332)||(12025582-12025696)
chr3 (22-76)||(21515726-21515780)
chr3 (22-75)||(15042398-15042451)
chr3 (22-75)||(41237005-41237058)
chr3 (292-332)||(45222344-45222384)
[»] chr1 (14 HSPs)
chr1 (218-340)||(31199941-31200063)
chr1 (218-332)||(32829359-32829472)
chr1 (259-332)||(31964291-31964364)
chr1 (36-76)||(10789189-10789229)
chr1 (292-332)||(17190101-17190141)
chr1 (20-75)||(19263883-19263938)
chr1 (25-76)||(39783235-39783286)
chr1 (218-333)||(50050371-50050486)
chr1 (218-333)||(51250632-51250747)
chr1 (218-340)||(8059625-8059747)
chr1 (22-72)||(17189799-17189849)
chr1 (218-328)||(46271514-46271623)
chr1 (218-287)||(13489449-13489518)
chr1 (265-333)||(38036557-38036625)
[»] scaffold0017 (1 HSPs)
scaffold0017 (221-332)||(28748-28859)
[»] chr4 (12 HSPs)
chr4 (218-315)||(24221817-24221913)
chr4 (22-75)||(35668412-35668465)
chr4 (22-75)||(41477722-41477775)
chr4 (292-340)||(32951843-32951891)
chr4 (218-332)||(35668103-35668215)
chr4 (22-72)||(24221592-24221642)
chr4 (218-340)||(27925766-27925888)
chr4 (263-340)||(23722842-23722919)
chr4 (26-75)||(26688174-26688223)
chr4 (22-75)||(28984188-28984241)
chr4 (22-75)||(50142079-50142132)
chr4 (262-338)||(15329264-15329340)
[»] chr5 (2 HSPs)
chr5 (218-346)||(9889258-9889386)
chr5 (292-340)||(29289991-29290039)
[»] scaffold0001 (1 HSPs)
scaffold0001 (218-340)||(396846-396968)


Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 20 - 470
Target Start/End: Complemental strand, 33130657 - 33130207
Alignment:
Q  20 ttatgcaactttagaatgttgcaagtattttatgataaaatatattatttgatattagtgaaaatagattacacatttttgttaagaaaatnnnnnnntt 119  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  33130657 ttatgcaactttagactgttgcaagtattttatgataaaat-tattatttgatattagtgaaaatagattacacatttttgttaagaaaataaaaaaatt 33130559  T
Q  120 gattaatttttatgaataaaatttgaggactcatcatttattcatttagtaatttgatattnnnnnnn-gaagtaacccagtttccaacctaaactagga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||        |||||||||||||||||||||||||||||||    
T  33130558 gattaatttttatgaataaaatttgaggactcatcatttattcatatagtaatttgatattaaaaaaaagaagtaacccagtttccaacctaaactagga 33130459  T
Q  219 attagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggtt 318  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33130458 attagtgggtttgtcaaaaccgaccaaataatataacgaatgattattttacttcactcaaaccgaagtatcatatatgattcgggttttgggtttggtt 33130359  T
Q  319 aaacccaacccaaattgacccatatacatcctacatcgacccataactgaccgtctctcaggaaagtcgggggagccaataatgtcgtcatttccaacgt 418  Q
    || |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33130358 aagcccaacccaaattgacccatatacatcctacatcgacccataatcgaccgtctctcaggaaagtcgggggagccaataatgtcgtcatttccaacgt 33130259  T
Q  419 ttacgaaaagttgtttgtctttttagttttgacattttctttgttgatgatg 470  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  33130258 ttacgaaaacttgttcgtctttttagttttgacattttctttgttgatgatg 33130207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 340
Target Start/End: Complemental strand, 36107185 - 36107063
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggt 317  Q
    |||||||||||||| | ||||| ||| | |||| |||||  ||  |||||||| | || ||||| | |||| | |||||| ||||||| ||||||||||     
T  36107185 aattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacctaacccaaaccggagtaccctatatggttcgggtcttgggtttggc 36107086  T
Q  318 taaacccaacccaaattgaccca 340  Q
     ||||||||||||||| ||||||    
T  36107085 caaacccaacccaaatcgaccca 36107063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 340
Target Start/End: Complemental strand, 41986845 - 41986723
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggt 317  Q
    |||||||||||||| | ||||| ||| | |||| |||||   |  |||||||| | || ||||||  |||||| |||||| |||| ||||||||||| ||    
T  41986845 aattagtgggtttgcccaaacccacccattaatttaacgggcggatattttacctaacccaaactagagtatcctatatggttcgagttttgggtttagt 41986746  T
Q  318 taaacccaacccaaattgaccca 340  Q
     ||||||||||||||| ||||||    
T  41986745 caaacccaacccaaatcgaccca 41986723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 292 - 333
Target Start/End: Original strand, 37633176 - 37633217
Alignment:
Q  292 tatatgattcgggttttgggtttggttaaacccaacccaaat 333  Q
    |||||||||||||| ||||||||||| |||||||||||||||    
T  37633176 tatatgattcgggtattgggtttggtcaaacccaacccaaat 37633217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 24685288 - 24685232
Alignment:
Q  20 ttatgcaactttagaatgttgcaagtattttatgataaaatatattatttgatatta 76  Q
    ||||||||||||||  ||||||||||||||||||||  | | |||||||||||||||    
T  24685288 ttatgcaactttagtttgttgcaagtattttatgatgcagtttattatttgatatta 24685232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 160
Target Start/End: Complemental strand, 8805097 - 8805055
Alignment:
Q  118 ttgattaatttttatgaataaaatttgaggactcatcatttat 160  Q
    |||| ||||||||||||| ||||| ||||||||||||||||||    
T  8805097 ttgaataatttttatgaaaaaaatatgaggactcatcatttat 8805055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 44524231 - 44524284
Alignment:
Q  22 atgcaactttagaatgttgcaagtattttatgataaaatatattatttgatatt 75  Q
    ||||||||||||  |||||||||||||||||||| ||   ||||||||||||||    
T  44524231 atgcaactttagtttgttgcaagtattttatgatgaaggttattatttgatatt 44524284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 332
Target Start/End: Original strand, 10461632 - 10461700
Alignment:
Q  264 attttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggttaaacccaacccaaa 332  Q
    ||||||| |||| ||||| | |||| | |||||| || |||||||||||||||  ||||||||||||||    
T  10461632 attttacctcacccaaaccggagtaccctatatggtttgggttttgggtttggccaaacccaacccaaa 10461700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 346
Target Start/End: Original strand, 40210620 - 40210748
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggt 317  Q
    |||||||||||||| | ||||| ||| | |||| |||||  ||| ||||||||   || ||||| | |||| | |||||||||||||| |||||||||      
T  40210620 aattagtgggtttgcccaaacccacccattaatttaacgggtgaatattttaccaaacccaaaccggagtaccctatatgattcgggtcttgggtttgac 40210719  T
Q  318 taaacccaacccaaattgacccatataca 346  Q
     ||| |||||||||||  |||||| ||||    
T  40210720 caaatccaacccaaatcaacccatttaca 40210748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 218 - 340
Target Start/End: Original strand, 31628156 - 31628278
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggt 317  Q
    |||||||||||||| | ||||| ||| | |||| |||||  ||  |||||||| | || ||||||| |||||| |||||| ||||||| |||||||| |     
T  31628156 aattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacctaacccaaactggagtatcctatatggttcgggtcttgggtttagc 31628255  T
Q  318 taaacccaacccaaattgaccca 340  Q
    |||||||||||||||| ||||||    
T  31628256 taaacccaacccaaatcgaccca 31628278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 36700697 - 36700644
Alignment:
Q  22 atgcaactttagaatgttgcaagtattttatgataaaatatattatttgatatt 75  Q
    ||||||||||||  |||||||||||||||||||| |||| ||||||||||||||    
T  36700697 atgcaactttaggttgttgcaagtattttatgatgaaatttattatttgatatt 36700644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 10329594 - 10329634
Alignment:
Q  36 tgttgcaagtattttatgataaaatatattatttgatatta 76  Q
    |||||||||||||||||||| |||| |||||||||||||||    
T  10329594 tgttgcaagtattttatgattaaatttattatttgatatta 10329634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 37675094 - 37675150
Alignment:
Q  20 ttatgcaactttagaatgttgcaagtattttatgataaaatatattatttgatatta 76  Q
    |||| |||||||||  ||||||||||||||||||||||||| | |||||| ||||||    
T  37675094 ttatccaactttagtttgttgcaagtattttatgataaaatttgttatttaatatta 37675150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 332
Target Start/End: Original strand, 30233473 - 30233560
Alignment:
Q  245 aataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggttaaacccaacccaaa 332  Q
    |||| ||||||| ||||||||||||| ||||   ||| | |||| | | |||| ||||||| ||||||||||| ||||||||||||||    
T  30233473 aatagtataacggatgattattttacctcaccttaaccggagtaccctctatggttcgggtcttgggtttggtcaaacccaacccaaa 30233560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 332
Target Start/End: Complemental strand, 15004281 - 15004167
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggt 317  Q
    |||||||||||||  | |||||| || |||| | |||||  ||  |||||||| |||| ||||| | |||| | |||||| || |||||||||||||||     
T  15004281 aattagtgggtttacccaaaccagcccaatagtttaacgggtggatattttacctcacccaaaccggagtaccctatatggtttgggttttgggtttggc 15004182  T
Q  318 taaacccaacccaaa 332  Q
     ||||||||||||||    
T  15004181 caaacccaacccaaa 15004167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 21467920 - 21467810
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggt 317  Q
    |||||||||||||||| ||||||| |||||| | |||||  || ||||||| | |||  ||||||| |||||  ||||||||||  || ||  ||||||     
T  21467920 aattagtgggtttgtccaaaccaatcaaatagtgtaacgggtggttatttttcctcatccaaactggagtattctatatgattcaagtcttaagtttggc 21467821  T
Q  318 taaacccaacc 328  Q
    |||||||||||    
T  21467820 taaacccaacc 21467810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 23443184 - 23443238
Alignment:
Q  22 atgcaactttagaatgttgcaagtattttatgataaaatatattatttgatatta 76  Q
    ||||||||||||  |||||||||||||||||||| || | ||||||||| |||||    
T  23443184 atgcaactttagtttgttgcaagtattttatgatgaattttattatttggtatta 23443238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 30233227 - 30233281
Alignment:
Q  22 atgcaactttagaatgttgcaagtattttatgataaaatatattatttgatatta 76  Q
    ||||||||||||| | || ||||||||||||||| |||| ||||| |||||||||    
T  30233227 atgcaactttagattatttcaagtattttatgatgaaatttattacttgatatta 30233281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 41492774 - 41492720
Alignment:
Q  22 atgcaactttagaatgttgcaagtattttatgataaaatatattatttgatatta 76  Q
    ||||||| ||||  |||||||||||||||||||  |||| |||||||||||||||    
T  41492774 atgcaacattagtttgttgcaagtattttatgacgaaatttattatttgatatta 41492720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 9995016 - 9994963
Alignment:
Q  22 atgcaactttagaatgttgcaagtattttatgataaaatatattatttgatatt 75  Q
    ||||||||||||  ||||||||||||||||||||  | | ||||||||||||||    
T  9995016 atgcaactttagtttgttgcaagtattttatgatggagtttattatttgatatt 9994963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 332
Target Start/End: Original strand, 22343013 - 22343082
Alignment:
Q  263 tattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggttaaacccaacccaaa 332  Q
    |||||||| |||| ||||| | |||| | |||||| || |||||||||||||||  ||||||||||||||    
T  22343013 tattttacctcacccaaaccggagtaccctatatggtttgggttttgggtttggccaaacccaacccaaa 22343082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 332
Target Start/End: Original strand, 22354673 - 22354742
Alignment:
Q  263 tattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggttaaacccaacccaaa 332  Q
    |||||||| |||| ||||| | |||| | |||||| || |||||||||||||||  ||||||||||||||    
T  22354673 tattttacctcacccaaaccggagtaccctatatggtttgggttttgggtttggccaaacccaacccaaa 22354742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 13248157 - 13248089
Alignment:
Q  222 agtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatc 290  Q
    |||||||||||| ||||| ||| |||| ||||||| | | |||||||||||||||| ||| | ||||||    
T  13248157 agtgggtttgtccaaacccacccaatagtataacggagggttattttacttcactcgaaccggagtatc 13248089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 43595520 - 43595484
Alignment:
Q  36 tgttgcaagtattttatgataaaatatattatttgat 72  Q
    |||||||| |||||||||||||||| |||||||||||    
T  43595520 tgttgcaaatattttatgataaaatttattatttgat 43595484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 332
Target Start/End: Original strand, 8423872 - 8423983
Alignment:
Q  221 tagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggttaa 320  Q
    ||||||||||||| | ||| ||| | |||||||||| |||   ||||||| |||| ||||| | ||||   |||||| ||||||||||||||||||| ||    
T  8423872 tagtgggtttgtccagacccacccagtaatataacggatggacattttacctcacccaaaccggagtactctatatggttcgggttttgggtttggtcaa 8423971  T
Q  321 acccaacccaaa 332  Q
    ||||||||||||    
T  8423972 acccaacccaaa 8423983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 40439342 - 40439287
Alignment:
Q  262 ttattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggt 317  Q
    ||||||| |||||| ||||| |||||||| |||||||||||||||||| |||||||    
T  40439342 ttattttgcttcacccaaaccgaagtatcctatatgattcgggttttgagtttggt 40439287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 13369808 - 13369878
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagta 288  Q
    ||||||||||||| || ||||| ||| |||| ||||||| ||| |||||||||||||| ||||| ||||||    
T  13369808 aattagtgggtttatccaaacccacccaatagtataacgtatggttattttacttcacccaaaccgaagta 13369878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 18890688 - 18890618
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagta 288  Q
    ||||| |||||||||| ||| | |||||||| |||||||  || ||||||||| |||| ||||||||||||    
T  18890688 aattaatgggtttgtccaaatccaccaaatagtataacgggtggttattttacctcacccaaactgaagta 18890618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 20464278 - 20464328
Alignment:
Q  25 caactttagaatgttgcaagtattttatgataaaatatattatttgatatt 75  Q
    |||||||||  |||||||||||||||||||| || | ||||||||||||||    
T  20464278 caactttagtttgttgcaagtattttatgatgaagtttattatttgatatt 20464328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 340
Target Start/End: Original strand, 30357447 - 30357569
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggt 317  Q
    |||||||||||||| | ||||| | | | |||| |||||  ||  |||||||| | || ||||| | |||| | |||||| ||||||| ||||||||||     
T  30357447 aattagtgggtttgcccaaacccatccattaatttaacgggtggatattttacctaacccaaaccggagtaccctatatggttcgggtcttgggtttggc 30357546  T
Q  318 taaacccaacccaaattgaccca 340  Q
     ||||||||||||||| ||||||    
T  30357547 caaacccaacccaaatcgaccca 30357569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 340
Target Start/End: Complemental strand, 34899296 - 34899174
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggt 317  Q
    |||||||||||||| | ||||| ||| | |||| ||||| |||  |||||||| | || ||||| | |||| | |||||  || |||| ||||||||||     
T  34899296 aattagtgggtttgcccaaacccacccattaatttaacggatggatattttacctaacccaaaccggagtaccctatatagtttgggtcttgggtttggc 34899197  T
Q  318 taaacccaacccaaattgaccca 340  Q
     ||||||||||||||| ||||||    
T  34899196 caaacccaacccaaatcgaccca 34899174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 13369578 - 13369631
Alignment:
Q  22 atgcaactttagaatgttgcaagtattttatgataaaatatattatttgatatt 75  Q
    ||||||||||||  ||||||||||||||||||||  | | ||||||||||||||    
T  13369578 atgcaactttagtttgttgcaagtattttatgatggagtttattatttgatatt 13369631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 24936277 - 24936330
Alignment:
Q  22 atgcaactttagaatgttgcaagtattttatgataaaatatattatttgatatt 75  Q
    ||||||||||||  ||||||||||||||||||||  | | ||||||||||||||    
T  24936277 atgcaactttagtttgttgcaagtattttatgatggattttattatttgatatt 24936330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 25684961 - 25685014
Alignment:
Q  22 atgcaactttagaatgttgcaagtattttatgataaaatatattatttgatatt 75  Q
    ||||||||||||  ||||||||||||||||||||  | | ||||||||||||||    
T  25684961 atgcaactttagtttgttgcaagtattttatgatggattttattatttgatatt 25685014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 17206056 - 17206096
Alignment:
Q  36 tgttgcaagtattttatgataaaatatattatttgatatta 76  Q
    |||||||||||||||||||| || | |||||||||||||||    
T  17206056 tgttgcaagtattttatgatgaagtttattatttgatatta 17206096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 17241779 - 17241739
Alignment:
Q  36 tgttgcaagtattttatgataaaatatattatttgatatta 76  Q
    |||||||| ||||||||||| |||| |||||||||||||||    
T  17241779 tgttgcaaatattttatgatgaaatttattatttgatatta 17241739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 19206016 - 19206056
Alignment:
Q  36 tgttgcaagtattttatgataaaatatattatttgatatta 76  Q
    ||||||||||||||||||||  ||| |||||||||||||||    
T  19206016 tgttgcaagtattttatgatgtaatttattatttgatatta 19206056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 2763 - 2833
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagta 288  Q
    |||||||||||||||| ||||| ||| ||||||||||||  || ||||||||| |||| ||||||||||||    
T  2763 aattagtgggtttgtccaaacccacccaataatataacgggtggttattttacctcacccaaactgaagta 2833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 4430 - 4500
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagta 288  Q
    |||||||||||||| | ||||| ||| ||||||||||||  || ||||||||| |||| ||||||||||||    
T  4430 aattagtgggtttggccaaacccacccaataatataacgggtggttattttacctcacccaaactgaagta 4500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 2516 - 2565
Alignment:
Q  26 aactttagaatgttgcaagtattttatgataaaatatattatttgatatt 75  Q
    ||||||||  |||||||||||||||||||| || | ||||||||||||||    
T  2516 aactttagtttgttgcaagtattttatgatgaagtttattatttgatatt 2565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 4188 - 4237
Alignment:
Q  26 aactttagaatgttgcaagtattttatgataaaatatattatttgatatt 75  Q
    ||||||||  |||||||||||||||||||| || | ||||||||||||||    
T  4188 aactttagtttgttgcaagtattttatgatgaagtttattatttgatatt 4237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 218 - 332
Target Start/End: Original strand, 24496305 - 24496418
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggt 317  Q
    ||||| |||||||||| ||||| | | |||| ||||||| ||| |||||||||  ||| |||||||||||| | ||| | |||  |||||||||||||||    
T  24496305 aattaatgggtttgtccaaacccatccaatagtataacggatggttattttaccccacccaaactgaagtaccctatttaatt-tggttttgggtttggt 24496403  T
Q  318 taaacccaacccaaa 332  Q
     ||||||||||||||    
T  24496404 caaacccaacccaaa 24496418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 9606230 - 9606177
Alignment:
Q  22 atgcaactttagaatgttgcaagtattttatgataaaatatattatttgatatt 75  Q
    ||||||||||||  |||||||||||||||||||| |||| ||||||||||||||    
T  9606230 atgcaactttagtttgttgcaagtattttatgatgaaatttattatttgatatt 9606177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 31261422 - 31261369
Alignment:
Q  22 atgcaactttagaatgttgcaagtattttatgataaaatatattatttgatatt 75  Q
    ||||||||||||| || ||||||||||||||||| || | ||||||||||||||    
T  31261422 atgcaactttagattgctgcaagtattttatgatgaagtttattatttgatatt 31261369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 24496083 - 24496133
Alignment:
Q  25 caactttagaatgttgcaagtattttatgataaaatatattatttgatatt 75  Q
    |||||||||  ||||||||||||||||||||||| | ||||||| ||||||    
T  24496083 caactttagtttgttgcaagtattttatgataaagtttattattagatatt 24496133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 218 - 340
Target Start/End: Complemental strand, 48432663 - 48432541
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggt 317  Q
    |||||||||||||| | ||||| ||| | |||| |||||  ||  |||||||| | || ||||| | |||||| |||||| ||||||| ||||||||||     
T  48432663 aattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacctaacccaaaccggagtatcctatatggttcgggtcttgggtttggc 48432564  T
Q  318 taaacccaacccaaattgaccca 340  Q
     ||||||||||||||| ||||||    
T  48432563 caaacccaacccaaatcgaccca 48432541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 28700067 - 28700016
Alignment:
Q  25 caactttagaatgttgcaagtattttatgataaaatatattatttgatatta 76  Q
    |||||||||  |||||||||||||||||||| |||| |||||||||||||||    
T  28700067 caactttagtttgttgcaagtattttatgatgaaatttattatttgatatta 28700016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 332
Target Start/End: Complemental strand, 12025696 - 12025582
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggt 317  Q
    |||||||||||||| | ||||| ||| | |||| |||||  ||  |||||||||| || ||||| | |||| | |||||| ||||||| |||||||| ||    
T  12025696 aattagtgggtttgcccaaacccacccattaatttaacgggtgtatattttacttaacccaaaccggagtaccctatatggttcgggtcttgggttttgt 12025597  T
Q  318 taaacccaacccaaa 332  Q
     ||||||||||||||    
T  12025596 aaaacccaacccaaa 12025582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 21515726 - 21515780
Alignment:
Q  22 atgcaactttagaatgttgcaagtattttatgataaaatatattatttgatatta 76  Q
    |||||||||||   |||||||||||||||||||| ||||  ||||||||||||||    
T  21515726 atgcaactttactttgttgcaagtattttatgatgaaattcattatttgatatta 21515780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 15042398 - 15042451
Alignment:
Q  22 atgcaactttagaatgttgcaagtattttatgataaaatatattatttgatatt 75  Q
    |||||||||||   |||||||||||||||||||| ||||  |||||||||||||    
T  15042398 atgcaactttaatttgttgcaagtattttatgatgaaattcattatttgatatt 15042451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 41237005 - 41237058
Alignment:
Q  22 atgcaactttagaatgttgcaagtattttatgataaaatatattatttgatatt 75  Q
    ||||||||||||  ||||||||||||||||||||  | | ||||||||||||||    
T  41237005 atgcaactttagtttgttgcaagtattttatgatggagtttattatttgatatt 41237058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 45222384 - 45222344
Alignment:
Q  292 tatatgattcgggttttgggtttggttaaacccaacccaaa 332  Q
    |||||| ||||||| ||||||||||| ||||||||||||||    
T  45222384 tatatggttcgggtcttgggtttggtcaaacccaacccaaa 45222344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 218 - 340
Target Start/End: Complemental strand, 31200063 - 31199941
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggt 317  Q
    |||||||||||||||| ||||| ||| | |||| |||||  ||  |||||||| | || ||||| | | || | |||||| ||||||| ||||||||||     
T  31200063 aattagtgggtttgtccaaacccacccattaatctaacgggtggatattttacctaacccaaaccggaataccttatatggttcgggtcttgggtttggc 31199964  T
Q  318 taaacccaacccaaattgaccca 340  Q
    |||||||||||||||| ||||||    
T  31199963 taaacccaacccaaatcgaccca 31199941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 332
Target Start/End: Complemental strand, 32829472 - 32829359
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggt 317  Q
    ||||||||| |||||| ||||| ||| |||| |||||||| || ||||||||| |||| ||||| | |||| | ||| || || || ||||||||||||     
T  32829472 aattagtggatttgtccaaacccacccaatagtataacgagtggttattttacctcacccaaaccggagtagcctatttggtttgg-ttttgggtttggc 32829374  T
Q  318 taaacccaacccaaa 332  Q
     ||||||||||||||    
T  32829373 caaacccaacccaaa 32829359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 31964291 - 31964364
Alignment:
Q  259 tgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggttaaacccaacccaaa 332  Q
    |||||||||||| |||||||||| | |||| | |||||| |||| |||||||||||||| |||| |||| ||||    
T  31964291 tgattattttacctcactcaaaccggagtaccctatatggttcgagttttgggtttggtcaaacacaactcaaa 31964364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 10789189 - 10789229
Alignment:
Q  36 tgttgcaagtattttatgataaaatatattatttgatatta 76  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  10789189 tgttgcaagtattttatgatgaaatatattatttaatatta 10789229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 17190101 - 17190141
Alignment:
Q  292 tatatgattcgggttttgggtttggttaaacccaacccaaa 332  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  17190101 tatatgattcgggttttaggtttggtcaaacccaacccaaa 17190141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 19263883 - 19263938
Alignment:
Q  20 ttatgcaactttagaatgttgcaagtattttatgataaaatatattatttgatatt 75  Q
    ||||||||||||||  ||||||||||||||||||||  | | ||||||||||||||    
T  19263883 ttatgcaactttagtttgttgcaagtattttatgatggagtttattatttgatatt 19263938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 39783286 - 39783235
Alignment:
Q  25 caactttagaatgttgcaagtattttatgataaaatatattatttgatatta 76  Q
    |||||||||  |||||||| ||||||||||| |||| |||||||||||||||    
T  39783286 caactttagtttgttgcaaatattttatgatgaaatttattatttgatatta 39783235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 333
Target Start/End: Original strand, 50050371 - 50050486
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggt 317  Q
    |||||||||||||||| ||||  ||| | |||| |||||  ||  |||||||| | || ||||| | | |||| |||||| ||||||| ||||||||||     
T  50050371 aattagtgggtttgtccaaactcacccattaatttaacgggtggatattttacctaacccaaaccggaatatcctatatggttcgggtcttgggtttggc 50050470  T
Q  318 taaacccaacccaaat 333  Q
     |||||||||||||||    
T  50050471 caaacccaacccaaat 50050486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 333
Target Start/End: Complemental strand, 51250747 - 51250632
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggt 317  Q
    |||||||||||||| | ||||  ||| | |||| ||||| |||| |||||||| | || ||||  | |||| | |||||| ||||||| ||||||||||     
T  51250747 aattagtgggtttgcctaaactcacccattaatttaacggatgaatattttacctaacccaaatcggagtaccctatatggttcgggtcttgggtttggc 51250648  T
Q  318 taaacccaacccaaat 333  Q
     |||||||||||||||    
T  51250647 caaacccaacccaaat 51250632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 340
Target Start/End: Original strand, 8059625 - 8059747
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggt 317  Q
    |||||||||||||| | ||||| ||| | |||| |||||  ||  |||||||| | || ||||| | |||| | |||||| || |||| ||||||||||     
T  8059625 aattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacctaacccaaaccggagtaccctatatggtttgggtcttgggtttggc 8059724  T
Q  318 taaacccaacccaaattgaccca 340  Q
     ||||||||||||||| ||||||    
T  8059725 caaacccaacccaaatcgaccca 8059747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 17189799 - 17189849
Alignment:
Q  22 atgcaactttagaatgttgcaagtattttatgataaaatatattatttgat 72  Q
    ||||||||||||  |||||||| |||||||||||||| | |||||||||||    
T  17189799 atgcaactttagtttgttgcaattattttatgataaagtttattatttgat 17189849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 46271623 - 46271514
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggt 317  Q
    ||||||| |||||||| ||||||||| |||||| ||| || || |||||||| || ||||||||  || || | |||||| ||||||| ||||||||| |    
T  46271623 aattagtaggtttgtccaaaccaacc-aataatgtaatgagtggttattttaatttactcaaaccaaactaccctatatggttcgggtcttgggtttgat 46271525  T
Q  318 taaacccaacc 328  Q
     ||| ||||||    
T  46271524 caaatccaacc 46271514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 287
Target Start/End: Original strand, 13489449 - 13489518
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagt 287  Q
    ||||||||||||| || ||||| |   |||| | ||||||||||||||||||||||||| || |||||||    
T  13489449 aattagtgggtttctccaaacctatttaatagtgtaacgaatgattattttacttcacttaagctgaagt 13489518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 38036557 - 38036625
Alignment:
Q  265 ttttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggttaaacccaacccaaat 333  Q
    |||||| |||| ||||| |||||||| |||||| || |||| || |||||||  |||||||||||||||    
T  38036557 ttttacctcacccaaaccgaagtatcctatatggtttgggtcttaggtttggccaaacccaacccaaat 38036625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 332
Target Start/End: Original strand, 28748 - 28859
Alignment:
Q  221 tagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggttaa 320  Q
    ||||||||||||| ||||| ||| | |||||||| |  |||  ||||||| |||| ||||  |||||||| |||||| ||| ||| ||||||||||  ||    
T  28748 tagtgggtttgtccaaacccacccattaatataatgggtgaacattttacctcacccaaatcgaagtatcctatatggttcaggtcttgggtttggccaa 28847  T
Q  321 acccaacccaaa 332  Q
    ||||||||||||    
T  28848 acccaacccaaa 28859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 315
Target Start/End: Original strand, 24221817 - 24221913
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttg 315  Q
    |||||||||||||| | ||||| ||| |||| |||||||| || ||||||||| |||||||||| | |||| | ||| |||||  |||||||||||||    
T  24221817 aattagtgggtttgcccaaacctacccaatagtataacgagtggttattttacctcactcaaaccggagtaccctatttgatt-tggttttgggtttg 24221913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 35668465 - 35668412
Alignment:
Q  22 atgcaactttagaatgttgcaagtattttatgataaaatatattatttgatatt 75  Q
    ||||||||||||  |||||||||||||||||||| || | ||||||||||||||    
T  35668465 atgcaactttagtttgttgcaagtattttatgatgaagtttattatttgatatt 35668412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 41477775 - 41477722
Alignment:
Q  22 atgcaactttagaatgttgcaagtattttatgataaaatatattatttgatatt 75  Q
    ||||||||||||  |||||||||||||||||||| || | ||||||||||||||    
T  41477775 atgcaactttagtttgttgcaagtattttatgatgaagtttattatttgatatt 41477722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 32951843 - 32951891
Alignment:
Q  292 tatatgattcgggttttgggtttggttaaacccaacccaaattgaccca 340  Q
    |||||| ||||||| |||||||||| |||||||||||||||| ||||||    
T  32951843 tatatggttcgggtcttgggtttggctaaacccaacccaaatcgaccca 32951891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 332
Target Start/End: Complemental strand, 35668215 - 35668103
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggt 317  Q
    |||||||||||||||| ||||| ||| |||| |||||| | |||||||||||| ||||  |||||| |||| | ||| ||||  ||  |||||||||||     
T  35668215 aattagtgggtttgtccaaacccacccaatagtataaccagtgattattttacctcacctaaactggagtaccctatttgatctgg--tttgggtttggc 35668118  T
Q  318 taaacccaacccaaa 332  Q
     |||| |||||||||    
T  35668117 caaactcaacccaaa 35668103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 24221592 - 24221642
Alignment:
Q  22 atgcaactttagaatgttgcaagtattttatgataaaatatattatttgat 72  Q
    ||||||||||||  |||||||||||||||||||| || | |||||||||||    
T  24221592 atgcaactttagtttgttgcaagtattttatgatgaagtttattatttgat 24221642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 340
Target Start/End: Original strand, 27925766 - 27925888
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggt 317  Q
    |||||||| ||||||| ||||| ||| | |||| |||||  ||  |||||||  | || ||||| |||||| | |||||| ||||||| |||||||||      
T  27925766 aattagtgagtttgtccaaacccacccattaatttaacgggtggatattttaactaacccaaaccgaagtaccctatatggttcgggtcttgggtttgac 27925865  T
Q  318 taaacccaacccaaattgaccca 340  Q
     ||||||||||||||| ||||||    
T  27925866 caaacccaacccaaatcgaccca 27925888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 340
Target Start/End: Complemental strand, 23722919 - 23722842
Alignment:
Q  263 tattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggttaaacccaacccaaattgaccca 340  Q
    |||||||| | || ||||| | |||| | |||||| ||||||| ||||||||||  ||||||||||||||| ||||||    
T  23722919 tattttacctaacccaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaatcgaccca 23722842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 26688174 - 26688223
Alignment:
Q  26 aactttagaatgttgcaagtattttatgataaaatatattatttgatatt 75  Q
    ||||||||  |||||||||||||||||||| || | ||||||||||||||    
T  26688174 aactttagtttgttgcaagtattttatgatgaagtttattatttgatatt 26688223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 28984241 - 28984188
Alignment:
Q  22 atgcaactttagaatgttgcaagtattttatgataaaatatattatttgatatt 75  Q
    ||||||||||||  |||||| ||||||||||||| ||||  |||||||||||||    
T  28984241 atgcaactttagtttgttgcgagtattttatgatgaaattcattatttgatatt 28984188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 50142132 - 50142079
Alignment:
Q  22 atgcaactttagaatgttgcaagtattttatgataaaatatattatttgatatt 75  Q
    |||||| |||||  |||||||||||||||||||| || | ||||||||||||||    
T  50142132 atgcaattttagtttgttgcaagtattttatgatgaagtttattatttgatatt 50142079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 338
Target Start/End: Complemental strand, 15329340 - 15329264
Alignment:
Q  262 ttattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggttaaacccaacccaaattgacc 338  Q
    ||||||||| |||||||||||| |  | | |||||| || |||||||||||||| | ||| |||||||||| |||||    
T  15329340 ttattttacctcactcaaactggaaaaccctatatggtttgggttttgggtttgatcaaatccaacccaaactgacc 15329264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 346
Target Start/End: Original strand, 9889258 - 9889386
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggt 317  Q
    |||||||||||||| | ||||| ||| | |||| |||||  ||  |||||||| | || ||||| | |||| | |||||| ||||||| | ||||||||     
T  9889258 aattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacctaacccaaaccggagtaccctatatggttcgggtctcgggtttggc 9889357  T
Q  318 taaacccaacccaaattgacccatataca 346  Q
     ||||||||||||||| ||||||| ||||    
T  9889358 caaacccaacccaaatcgacccatgtaca 9889386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 29289991 - 29290039
Alignment:
Q  292 tatatgattcgggttttgggtttggttaaacccaacccaaattgaccca 340  Q
    |||||| ||||||| ||||||||||  ||||||||||||||| ||||||    
T  29289991 tatatggttcgggtcttgggtttggccaaacccaacccaaatcgaccca 29290039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 340
Target Start/End: Complemental strand, 396968 - 396846
Alignment:
Q  218 aattagtgggtttgtcaaaaccaaccaaataatataacgaatgattattttacttcactcaaactgaagtatcatatatgattcgggttttgggtttggt 317  Q
    |||||||||||||| | ||||| ||| | |||| |||||  ||  |||||||| | || ||||| | |||| | |||||| ||||||| |||||||| |     
T  396968 aattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacctaacccaaaccggagtaccctatatggttcgggtcttgggtttagc 396869  T
Q  318 taaacccaacccaaattgaccca 340  Q
     ||||||||||||||| ||||||    
T  396868 caaacccaacccaaatcgaccca 396846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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