View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_low_14 (Length: 469)
Name: NF20146_low_14
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 36083401 - 36083857
Alignment:
| Q |
1 |
ccacttcatgcagcgatggtggtgatggtggtggtggaggaggaggcagagaatcacttaccttcatgtgtacttcttcttgtccttgtttcggagagtg |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36083401 |
ccacttcatgcagcgatggtggtg---gtggtggtggaggaggaggtagagaatcactttccttcatgtgtacttcttcttgtccttgtttcggagagtg |
36083497 |
T |
|
| Q |
101 |
ttcttcttctttgtcatttattttgagtgcacatgtttggaggagaagtgcttgttcttcctctttgtgtgcttgaacttccatggtgtccggttgtggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36083498 |
ttcttcttctttgtcatttattttgagtgcacatgtttggaggagaagtgcttgttcttcctctttgtgtgcttgaacttccatggtgtccggttgtggt |
36083597 |
T |
|
| Q |
201 |
gtgattaagaggagaagttcttcttcttggtctttgttgtgaacttcaacttcaatggtgtgcggttgtggtttagttaaaaggagaggtgcttcttctt |
300 |
Q |
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| T |
36083598 |
gtgattaagaggagaagttcttcttcttggtctttgttgtgaacttcaacttcaatggtgtgcggtcgtggtttagttaaaaggagaggtgcttcttctt |
36083697 |
T |
|
| Q |
301 |
gctctttgttgtgaacttgattttcgatggtatgattttgtggtgtggttaagtgaagaaattcttctttttgccctttgtgaacttgaacttccaaagt |
400 |
Q |
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| T |
36083698 |
gctctttgttgtgaacttgattttcgatggtatgattttgtggtgtggttaagtgaagaaattcttctttttgccctttgtgaacttgaacttccaaagt |
36083797 |
T |
|
| Q |
401 |
aagcagtaataaaaaactatagggtgcatggcttctcaaacatcttctttttgccctttg |
460 |
Q |
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| T |
36083798 |
aagcagtaataaaaaactatagggtgcatggcttctcaaacatcttctttttgccctttg |
36083857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 27 - 309
Target Start/End: Original strand, 36149696 - 36149972
Alignment:
| Q |
27 |
ggtggtggtggaggaggaggcagagaatcacttaccttcatgtgtacttcttcttgtccttgtttcggagagtgttcttcttctttgtcatttattttga |
126 |
Q |
| |
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||||||||||| | ||||||| ||||||||||| ||||||| || ||||||| || || | || ||||||| |||||||||| |||| |||||||| |
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| T |
36149696 |
ggtggtggtggtgaaggaggcggagaatcactttccttcatttgcacttcttttt---ctagcttgggagagt---cttcttctttctcatctattttga |
36149789 |
T |
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| Q |
127 |
gtgcacatgtttggaggagaagtgcttgttcttcctctttgtgtgcttgaacttccatggtgtccggttgtggtgtgattaagaggagaagttcttcttc |
226 |
Q |
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| T |
36149790 |
gtgcacatgtttggaggagaagtgcttcttcttcgtctttgcgtgcttgaacttcaatggtgtgcggatgtggtatagttaaaagtagaggtgctttttc |
36149889 |
T |
|
| Q |
227 |
ttggtctttgttgtgaacttcaacttcaatggtgtgcggttgtggtttagttaaaaggagaggtgcttcttcttgctctttgt |
309 |
Q |
| |
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||| |||||||||||||||||| |||||| ||| || ||||||| | ||||| | ||| || |||||||||| ||||||| |
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| T |
36149890 |
ttgctctttgttgtgaacttcagcttcaagggtatgattttgtggtgtggttaagtgaagaagttcttcttcttgatctttgt |
36149972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 209 - 396
Target Start/End: Original strand, 36149803 - 36149987
Alignment:
| Q |
209 |
gaggagaagttcttcttcttggtctttgttgtgaacttcaacttcaatggtgtgcggttgtggtttagttaaaaggagaggtgcttcttcttgctctttg |
308 |
Q |
| |
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|||||||||| ||||||||| ||||||| ||| ||| |||||||||||||||||| |||||| |||||||||| |||||||||| ||||||||||||| |
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| T |
36149803 |
gaggagaagtgcttcttcttcgtctttgc-gtg--cttgaacttcaatggtgtgcggatgtggtatagttaaaagtagaggtgctttttcttgctctttg |
36149899 |
T |
|
| Q |
309 |
ttgtgaacttgattttcgatggtatgattttgtggtgtggttaagtgaagaaattcttctttttgccctttgtgaacttgaacttcca |
396 |
Q |
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| T |
36149900 |
ttgtgaacttcagcttcaagggtatgattttgtggtgtggttaagtgaagaagttcttcttcttgatctttgtgggcttgaatttcca |
36149987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 363 - 443
Target Start/End: Original strand, 36083840 - 36083922
Alignment:
| Q |
363 |
tcttctttttgccctttgtgaacttgaacttccaaagtaagcagtaataaaa-aac-tatagggtgcatggcttctcaaacat |
443 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||| |||||||||||||||||| |
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| T |
36083840 |
tcttctttttgccctttgtgaacttgaacttccaaagtaagtagtaataaaagaacttatagggcgcatggcttctcaaacat |
36083922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 136
Target Start/End: Original strand, 36149518 - 36149610
Alignment:
| Q |
41 |
aggaggcagagaatcacttaccttcatgtgtacttcttcttgtccttgtttcggagagtgttcttcttctttgtcatttattttgagtgcacatgt |
136 |
Q |
| |
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| T |
36149518 |
aggaggcggagaatcattttccatcatgggaacttcttcttgt---tgtttaggagagtgttcttcttctttgtcatctattttgagtgcacatgt |
36149610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 186
Target Start/End: Original strand, 36160590 - 36160672
Alignment:
| Q |
104 |
ttcttctttgtcatttattttgagtgcacatgtttggaggagaagtgcttgttcttcctctttgtgtgcttgaacttccatgg |
186 |
Q |
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| T |
36160590 |
ttcttctttgttgtctatttgaagtgcaagtgtttggatgagaagtgcttcttcttgctctttgtatgcttgagcttccatgg |
36160672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 159
Target Start/End: Original strand, 36149358 - 36149453
Alignment:
| Q |
61 |
ccttcatgtgtacttcttcttgtccttgtttcggagagtgttcttcttctttgtcatttattttgagtgcacatgtttggaggagaagtgcttgttctt |
159 |
Q |
| |
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|||||| |||| || ||||||||||||| || |||||||| |||||||||||| | |||||| ||||| |||||||||| || ||||||| ||||| |
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| T |
36149358 |
ccttcacgtgtgctacttcttgtccttgattaggagagtg---ttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctt |
36149453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 182
Target Start/End: Complemental strand, 26527484 - 26527329
Alignment:
| Q |
27 |
ggtggtggtggaggaggaggcagagaatcacttaccttcatgtgtacttcttcttgtccttgtttcggagagtgttcttcttctttgtcatttattttga |
126 |
Q |
| |
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|||||| |||| | ||||||| || |||||||| | |||||||| ||||||| || || | || ||||||||||||||| | |||| |||||||| |
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| T |
26527484 |
ggtggtagtggtgaaggaggcggaaaatcactttcattcatgtgcacttcttttt---ctagcttgggagagtgttcttcta---tctcatctattttga |
26527391 |
T |
|
| Q |
127 |
gtgcacatgtttggaggagaagtgcttgttctt------cctctttgtgtgcttgaacttcc |
182 |
Q |
| |
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||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
26527390 |
gtgcacatgtttggaggagaagtgcttcttcttcttctacctctttgtgtgcttgaacttcc |
26527329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 159
Target Start/End: Complemental strand, 26527624 - 26527541
Alignment:
| Q |
73 |
cttcttcttgtccttgtttcggagagtgttcttcttctttgtcatttattttgagtgcacatgtttggaggagaagtgcttgttctt |
159 |
Q |
| |
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|||||||||||||||| || ||||| |||||||||| |||| | |||||| ||||| |||||||||| || ||||||| ||||| |
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| T |
26527624 |
cttcttcttgtccttgcttaggagactgttcttctt---tgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctt |
26527541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 17454150 - 17454218
Alignment:
| Q |
105 |
tcttctttgtcatttattttgagtgcacatgtttggaggagaagtgcttgttcttcctctttgtgtgct |
173 |
Q |
| |
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|||||||||| | ||||||||||||| |||||||| |||||||| || ||||| |||||||| |||| |
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| T |
17454150 |
tcttctttgttgtctattttgagtgcatgtgtttggatgagaagtgtttattcttgctctttgtatgct |
17454218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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