View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_low_15 (Length: 464)
Name: NF20146_low_15
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 43210158 - 43210604
Alignment:
| Q |
1 |
cgttgcttcttaaaagcacgtagataaaccagaaatagacaacatctaggcaaaatttctcacgggggaatacaactaaaatagaaaatttatggaaaaa |
100 |
Q |
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| T |
43210158 |
cgttgcttcttaaaagcacgtagataaaccaaaaatagacaacatctaggcaaaatttctcacgggggaatacaactaaaatagaaaatttatggaaaaa |
43210257 |
T |
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| Q |
101 |
gacaaacatatataaatctttgtcataaccaacaaaaacaaagatgtgaaaggcataacaaacacaactatggttttggaggttaaggagggagaaggat |
200 |
Q |
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| T |
43210258 |
gacaaacatatataaatctttgtcataaccaacaaaaacaaagatgtgaaaggcataacatacacaactatggttttggaggttaaggagggagaaggat |
43210357 |
T |
|
| Q |
201 |
gcattatggcatcaagttttctctaataaatatgatcatgtaaattatgatgtagttggggttaaaaatacgatttgttggagaaatannnnnnngtatt |
300 |
Q |
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| T |
43210358 |
gcattatggcatcaagttttgtctaataaatatgatcatgtaaatgatgatgtagttggggttaaaaatacgatttgttggagaaatatttttttgtatt |
43210457 |
T |
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| Q |
301 |
gtccgaggtaatgaggagagtggagggagatggttagttgttaacgttactaaaacggtagagagtagtagtaccacattattttggcatgaaccatggt |
400 |
Q |
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| T |
43210458 |
gtccgaggtaatgaggagagtggagggagatggtttgttggtaacgttactaaaacggtagagagtagtagtaccacattattttggcatgaaccatggt |
43210557 |
T |
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| Q |
401 |
tgggtgatgaggttttaaaggagtgctttaatgtgctttgagaaaag |
447 |
Q |
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| T |
43210558 |
tgggtgatgaggttttaaaggagtgctttaatgtgctttgagaaaag |
43210604 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 21462425 - 21462469
Alignment:
| Q |
311 |
atgaggagagtggagggagatggttagttgttaacgttactaaaa |
355 |
Q |
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| T |
21462425 |
atgaggagagtggagggagatggtttgtggataatgttactaaaa |
21462469 |
T |
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