View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_low_18 (Length: 390)
Name: NF20146_low_18
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 2140952 - 2141241
Alignment:
| Q |
1 |
tagttgaatctttggatattgttctatccttgaatgatcaagtccaaacacaaaccaagagggttcccgatcacttggttctatgatgataattgtttgt |
100 |
Q |
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| T |
2140952 |
tagttgaatctttggatattgttctatccttgaatgatcaagtccaaacacaaaccaatgaggttcctgattacttggttctatgttcgtaattgtttgt |
2141051 |
T |
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| Q |
101 |
gtttgttggatatatggttttgctgtctatctttacataggtatagagttacccacatgaagagcaaaattccagttagtccccatactacttgaaaaaa |
200 |
Q |
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| T |
2141052 |
gtttgttgg--gtatgattttgctgtctatctttacatagggatagagttacccacatgaagagcaaaattccagttagtccccatatta--gaaaaaaa |
2141147 |
T |
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| Q |
201 |
tagatagttttattctttggagttgtaggatttccacctgtataattagaactgtagtataagctattgcaatttatttatacattatcaataa |
294 |
Q |
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| T |
2141148 |
cagatagttttattctttggagttgtaggatttccacctgtataattagaactgtagtataagctattgcaatttatttatacattatcaataa |
2141241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 2145486 - 2145765
Alignment:
| Q |
1 |
tagttgaatctttggatattgttctatccttgaatgatcaagtccaaacacaaaccaagagggttcccgatcacttggttctatgatgataattgtttgt |
100 |
Q |
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| T |
2145486 |
tagttgaatctttggatattgttctatccttgaatgatcaagtccaaacacaaaccaagagggttcccgatcacttggttctatgatgataattgtttgt |
2145585 |
T |
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| Q |
101 |
gtttgttggatatatggttttgctgtctatctttacataggtatagagttacccacatgaagagcaaaattccagttagtccccatactacttgaaaaaa |
200 |
Q |
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| T |
2145586 |
gtttgctgg--atatggttttgctgtctatctttacatagggatagagttacccccatgaggagcaaaattccagttactccccatactacttcaaaaaa |
2145683 |
T |
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| Q |
201 |
-tagatagttttattctttggagttgtaggatttccacctgtataattagaactgtagtataagctattgcaatttatttata |
282 |
Q |
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| T |
2145684 |
gtagatattttcatgctttggacttggaggatttacgcctatagaattagaact-tagtataagtttttgcaatttatttata |
2145765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 2149962 - 2150198
Alignment:
| Q |
2 |
agttgaatctttggatattgttctatccttgaatgatcaagtccaaacacaaaccaagagggttcccgatcacttggttctatgatgataattgtttgtg |
101 |
Q |
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| T |
2149962 |
agttgaatctttggatattgttctatccttgaatgatcaagtccaaacacaaaccaatgaggttcctgattacttggttctatgttcgtaattgtttgtg |
2150061 |
T |
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| Q |
102 |
tttgttggatatatggttttgctgtctatctttacataggtatagagttacccacatgaagagcaaaattccagttagtccccatactacttgaaaaaa- |
200 |
Q |
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| T |
2150062 |
tttgttgg--gtatggttttgctgtctatctttacatacagataaagttacccacatgaagaacaaaagtccagatattccccataccactggaaaaaag |
2150159 |
T |
|
| Q |
201 |
tagatagttttattctttggagttgtaggatttccacct |
239 |
Q |
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| T |
2150160 |
tatatatttttagcctttggagctgtagcattcccacct |
2150198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 286 - 377
Target Start/End: Original strand, 2141649 - 2141740
Alignment:
| Q |
286 |
tatcaataaaactatatatttgtattataaaaagttatacctgggttatcaaagtaattgtaacaagtaacatcataacctgtaccctttgc |
377 |
Q |
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| T |
2141649 |
tatcaataaaactatatatttgtattataaaaagttatacctgggttatcaaagtaactgtaacaagtaacatcataacctgtaccctttgc |
2141740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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