View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_low_22 (Length: 358)
Name: NF20146_low_22
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 348
Target Start/End: Original strand, 5500988 - 5501318
Alignment:
| Q |
18 |
aacagaaatgattgaggccatgtcttgcagcaacctaagtttggggttgttgcatttgagtcaaaatcaactaactgggaaattgccacgttctttgggg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
5500988 |
aacagaaatgattgaggccatgtcttgcagcaacctaagtttggggttgttggatttgagtcaaaatcaactaagtgggaaattgccccgttctttgggg |
5501087 |
T |
|
| Q |
118 |
acgtttaacaaactgtttagtcttgacctgtcaagaaactcagcgaactcgcactcaggtatctcaggtcctataccagcatctataggaaacttatcaa |
217 |
Q |
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| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5501088 |
atgtttaacaaactgtttagtgttgacctgtcaagaaactcaatgaactcgcactcaggtatctcaggtcctataccagcatctataggaaacttatcaa |
5501187 |
T |
|
| Q |
218 |
aactaggttccctaaacttggaaggcaacataatgaatgggacgattcctgaaagtattggtcaactaaccaatttgtattctctacacctacatgagaa |
317 |
Q |
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|||||||| |||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
5501188 |
aactaggtgccctgaacttggaaggcaacatgatgaatgggacaattccagaaagtattggtcaactaaccaatttgtattctctacacctacttggtaa |
5501287 |
T |
|
| Q |
318 |
ttattgggaaggtataatgacaaatattcat |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
5501288 |
ttattgggaaggtataatgacaaatattcat |
5501318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 28 - 348
Target Start/End: Original strand, 5495966 - 5496286
Alignment:
| Q |
28 |
attgaggccatgtcttgcagcaacctaagtttggggttgttgcatttgagtcaaaatcaactaactgggaaattgccacgttctttggggacgtttaaca |
127 |
Q |
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||||||||||||||||| ||||||| ||||||| ||||||| |||||||| | || |||||||||||||||||||| | |||||| |||| ||||| || |
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| T |
5495966 |
attgaggccatgtcttgtagcaaccaaagtttgatgttgttggatttgagttataaccaactaactgggaaattgcctcattctttagggaagtttacca |
5496065 |
T |
|
| Q |
128 |
aactgtttagtcttgacctgtcaagaaactcagcgaactcgcactcaggtatctcaggtcctataccagcatctataggaaacttatcaaaactaggttc |
227 |
Q |
| |
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| |||||||| |||||| | ||||||||| ||| || || ||||||||| |||||||||| |||||| |||||||||||||||||||||| ||| |||| |
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| T |
5496066 |
atctgtttaggcttgacatatcaagaaacacagtaaattcacactcaggtgtctcaggtccaataccaacatctataggaaacttatcaaatctacgttc |
5496165 |
T |
|
| Q |
228 |
cctaaacttggaaggcaacataatgaatgggacgattcctgaaagtattggtcaactaaccaatttgtattctctacacctacatgagaattattgggaa |
327 |
Q |
| |
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|| |||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| |||| ||| |||||||||| ||||||| ||||| || |
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| T |
5496166 |
tctttacttggaaggcaacatgatgaatggaacaattcctgaaagtattggtcaactaaccaaattgttttccctacacctacttgagaatgattggaaa |
5496265 |
T |
|
| Q |
328 |
ggtataatgacaaatattcat |
348 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
5496266 |
ggtataatgacaaatattcat |
5496286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 22 - 348
Target Start/End: Original strand, 5490175 - 5490501
Alignment:
| Q |
22 |
gaaatgattgaggccatgtcttgcagcaacctaagtttggggttgttgcatttgagtcaaaatcaactaactgggaaattgccacgttctttggggacgt |
121 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| |||| || | || |||| ||||||||||||||| |||||| ||||| | ||| || || |
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| T |
5490175 |
gaaatgattgaggcaatgtcttgtagcaaccaaagtctgaagagtttagatttaagtcaaaatcaactatttgggaatttgcccaatagtttaggtcagt |
5490274 |
T |
|
| Q |
122 |
ttaacaaactgtttagtcttgacctgtcaagaaactcagcgaactcgcactcaggtatctcaggtcctataccagcatctataggaaacttatcaaaact |
221 |
Q |
| |
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|||| || ||||||||||||| || |||| ||||||| |||| | ||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
5490275 |
ttaaaaatttgtttagtcttgatctatcaaaaaactcatggaacacacactcaggtgtctcaggtcctataccagcatctataggaaacttatcaaattt |
5490374 |
T |
|
| Q |
222 |
aggttccctaaacttggaaggcaacataatgaatgggacgattcctgaaagtattggtcaactaaccaatttgtattctctacacctacatgagaattat |
321 |
Q |
| |
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||| || | ||||||||||||||| |||||||||| |||||||||||||| ||||||||||| |||||| ||||||| || ||| ||| |||||| |
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| T |
5490375 |
gaattctctgagcttggaaggcaacatgttgaatgggacaattcctgaaagtatcggtcaactaacagatttgttttctctaaacttacttgacaattat |
5490474 |
T |
|
| Q |
322 |
tgggaaggtataatgacaaatattcat |
348 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
5490475 |
tgggaaggtataatgacaaatattcat |
5490501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 22 - 348
Target Start/End: Original strand, 5485215 - 5485531
Alignment:
| Q |
22 |
gaaatgattgaggccatgtcttgcagcaacctaagtttggggttgttgcatttgagtcaaaatcaactaactgggaaattgccacgttctttggggacgt |
121 |
Q |
| |
|
|||||||| |||| | ||||||| ||||||| |||||||| | ||||| ||||||||||||||||| ||| |||||||||| | | |||||| | || |
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| T |
5485215 |
gaaatgatcgaggtcgtgtcttggagcaaccaaagtttggagatgttggatttgagtcaaaatcaattaaatgggaaattgtcccattctttagaacagt |
5485314 |
T |
|
| Q |
122 |
ttaacaaactgtttagtcttgacctgtcaagaaactcagcgaactcgcactcaggtatctcaggtcctataccagcatctataggaaacttatcaaaact |
221 |
Q |
| |
|
|||| | || | | |||||| |||||||| || |||| |||||| ||| ||| ||| |||||| ||| |||||||||||||||||| || |
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|
| T |
5485315 |
ttaaaagtctatatgatcttgatctgtcaagcaattcagtgaactcacacacag----------tccaataccaacatttataggaaacttatcaaatct |
5485404 |
T |
|
| Q |
222 |
aggttccctaaacttggaaggcaacataatgaatgggacgattcctgaaagtattggtcaactaaccaatttgtattctctacacctacatgagaattat |
321 |
Q |
| |
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| ||| || ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||| ||| |||||| |
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| T |
5485405 |
atattctctgaacttggaaggcaacatgatgaatgggataattcctgaaagtattggtcaactaaccaatttgaattctctaaacctacttgacaattat |
5485504 |
T |
|
| Q |
322 |
tgggaaggtataatgacaaatattcat |
348 |
Q |
| |
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|||||||||| ||||||||||| |||| |
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| T |
5485505 |
tgggaaggtacaatgacaaatactcat |
5485531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 174 - 348
Target Start/End: Original strand, 5467570 - 5467744
Alignment:
| Q |
174 |
aggtatctcaggtcctataccagcatctataggaaacttatcaaaactaggttccctaaacttggaaggcaacataatgaatgggacgattcctgaaagt |
273 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||| |||| | | | ||| | |||||| ||||||||||| ||||||||||| |
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|
| T |
5467570 |
aggtatctcgggtcctataccagcatctataggaaatttatcaaatctagaatttttgtatttgagaaacaacatgatgaatgggacaattcctgaaagc |
5467669 |
T |
|
| Q |
274 |
attggtcaactaaccaatttgtattctctacacctacatgagaattattgggaaggtataatgacaaatattcat |
348 |
Q |
| |
|
|||||| |||||||||||||||||| |||| |||||| ||||||| |||||||||||| ||||||||||||||| |
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|
| T |
5467670 |
attggtaaactaaccaatttgtattttctagacctacttgagaatcattgggaaggtactatgacaaatattcat |
5467744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 82 - 348
Target Start/End: Original strand, 5482178 - 5482444
Alignment:
| Q |
82 |
aatcaactaactgggaaattgccacgttctttggggacgtttaacaaactgtttagtcttgacctgtcaagaaactcagcgaactcgcactcaggtatct |
181 |
Q |
| |
|
||||||||||||||||||||||| | |||||| ||| ||||||| |||| |||||| || |||| ||||| | || || ||||||||||||| |
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|
| T |
5482178 |
aatcaactaactgggaaattgcctcattctttagggcaatttaacagtttgttctttcttgatctttcaaacaactctgtcaattcacactcaggtatct |
5482277 |
T |
|
| Q |
182 |
caggtcctataccagcatctataggaaacttatcaaaactaggttccctaaacttggaaggcaacataatgaatgggacgattcctgaaagtattggtca |
281 |
Q |
| |
|
|||||| ||||||| | |||||||||||||||||||| ||| | || | |||||| ||||| |||| ||| | ||||||||| |||| |||| |
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| T |
5482278 |
caggtcatataccaacctctataggaaacttatcaaatctaaatcatctgagcttggagaataacatgatgactggtataattcctgaatgtatcagtca |
5482377 |
T |
|
| Q |
282 |
actaaccaatttgtattctctacacctacatgagaattattgggaaggtataatgacaaatattcat |
348 |
Q |
| |
|
||| ||||||||||||| |||| | |||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
5482378 |
acttaccaatttgtattatctaaaactacttgagaattattgggagggtataatgacaaatattcat |
5482444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 331
Target Start/End: Original strand, 5477206 - 5477359
Alignment:
| Q |
178 |
atctcaggtcctataccagcatctataggaaacttatcaaaactaggttccctaaacttggaaggcaacataatgaatgggacgattcctgaaagtattg |
277 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| || | || || || |||| ||||| ||||||||| ||||| ||||| |||| |
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| T |
5477206 |
atctcaggtcctataccaacatctataggaaacttatcaaatcttgtttatctgaatgtggacaacaacaagttgaatgggaaaattccggaaagcattg |
5477305 |
T |
|
| Q |
278 |
gtcaactaaccaatttgtattctctacacctacatgagaattattgggaaggta |
331 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
5477306 |
gtaaactaaccaatttgcattctctacacctacgcgagaattattgggaaggta |
5477359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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