View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20146_low_25 (Length: 330)
Name: NF20146_low_25
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 1357040 - 1357337
Alignment:
| Q |
18 |
aattcagtgattatgatgagaaaggatgaaatatctgctttcgtttcaaaggaatctgtaagggtttgaccctttaagagtaacaatttctcagctaaat |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1357040 |
aattcagtgattatgatgagaagggatgaaatatctgcttttgtttcaaaggaatctgtaagggtttgaccctttaagagtaacaatttctcagctaaat |
1357139 |
T |
|
| Q |
118 |
gattaagaattgaatattttgtatcatttattgattgcaatgaagcattacaagataatttgattaaaatactaaagttgcagagaagtacaaaagaagg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1357140 |
gattaagaattgaatattttgtatcatttattgattgcaatgaagcattacaagataatttgattaaaatactaaagttgcagagaagtacaaaagaagg |
1357239 |
T |
|
| Q |
218 |
ggataagaaacagagaagaatattcagagggagaaatagagacttcaatccatattattttcatgccttcccataattcatcctttctccttttatat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1357240 |
ggataagaaacagagaagaatattcagagggagaaatagagacttcaatccatattattttcatgccttcccataattcatcctttctccttttatat |
1357337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 28034679 - 28034725
Alignment:
| Q |
136 |
ttgtatcatttattgattgcaatgaagcattacaagataatttgatta |
183 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28034679 |
ttgtatcatttattgattgcaat-aagcattacaagataatttgatta |
28034725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 44146641 - 44146681
Alignment:
| Q |
141 |
tcatttattgattgcaatgaagcattacaagataatttgat |
181 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
44146641 |
tcatttattgattgcattgaaacattacaagataagttgat |
44146681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University