View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_low_26 (Length: 327)
Name: NF20146_low_26
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 304
Target Start/End: Complemental strand, 22571692 - 22571390
Alignment:
| Q |
10 |
ttatactaatggtttgaaaggttcgttgtgagagaagatgggattgcagaccgtttggaccgtttttgaagcgtccaacctaactatgaaggtagaacta |
109 |
Q |
| |
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||||| || ||| ||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||| |||||| || ||||||||||| | |
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| T |
22571692 |
ttatattagtggattgaaaggttcgttgcaagagaagatgggattgcagaccgtttggatcgttgttgaagcgtcaaacctagctttgaaggtagaattg |
22571593 |
T |
|
| Q |
110 |
atagagaaatctcccatagatttctcaaatttcgaaaggtattctccacataacaatactgatgacaaagagaagagtgcatc--------attcaaatc |
201 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||| | ||||||||| |
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| T |
22571592 |
atagagaaatcccccatagatttctcaaatttcgaaaggtattctctacagaacaatactgatgacaaagagaatagtgcagcaaccaaagattcaaatc |
22571493 |
T |
|
| Q |
202 |
atgttagcaaagcaagcagttctagcagtgcaccgcaacacaaggtccctgtccaaaaacaaaacaacccatgtatgaaatctaccgatgatactgaaag |
301 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22571492 |
atgttagcaaagcaagtagttctagcagtgcaccgcaacacaaggcccccgtccaaaaacaaaacaacccatgtatgaaacctaccgatgatactgaaag |
22571393 |
T |
|
| Q |
302 |
ctc |
304 |
Q |
| |
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||| |
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|
| T |
22571392 |
ctc |
22571390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 10 - 273
Target Start/End: Original strand, 3536893 - 3537164
Alignment:
| Q |
10 |
ttatactaatggtttgaaaggttcgttgtgagagaagatgggattgcagaccgtttggaccgtttttgaagcgtccaacctaactatgaaggtagaacta |
109 |
Q |
| |
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||||| || |||||||||| |||| ||| ||||||||||| ||| ||||| ||||| |||||| |||||||||||||||| || | |||| ||| || |
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| T |
3536893 |
ttatattagtggtttgaaaagttcattgcaagagaagatggaattacagactgtttgtaccgttgctgaagcgtccaacctagctttaaaggcggaatta |
3536992 |
T |
|
| Q |
110 |
atagagaaatctcccatagatttctcaaatttcgaaaggtattctccacataacaatactgatgacaaagagaagagtgcatc--------attcaaatc |
201 |
Q |
| |
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||||||||||| |||||| |||||||||||||| ||| ||||||||||| ||| | |||||||||||||||| |||||| | ||||||| | |
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| T |
3536993 |
atagagaaatcccccataaatttctcaaatttcagaagatattctccacagaaccaagctgatgacaaagagaaaagtgcagcagtcaaagattcaaacc |
3537092 |
T |
|
| Q |
202 |
atgttagcaaagcaagcagttctagcagtgcaccgcaacacaaggtccctgtccaaaaacaaaacaacccat |
273 |
Q |
| |
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||| ||||||||||||||||||| |||||||||| | | ||||| |||||||||||| || |||||||||| |
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| T |
3537093 |
atgctagcaaagcaagcagttctggcagtgcacctccagtcaaggcccctgtccaaaagcagaacaacccat |
3537164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 30048506 - 30048613
Alignment:
| Q |
10 |
ttatactaatggtttgaaaggttcgttgtgagagaagatgggattgcagaccgtttggaccgtttttgaagcgtccaacctaactatgaaggtagaacta |
109 |
Q |
| |
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||||| || |||||||||| |||| ||| ||||||||||||||| ||||| |||||||||||| ||||||||||||| || || |||||| |||| || |
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| T |
30048506 |
ttatattagtggtttgaaaagttcattgcaagagaagatgggattacagactgtttggaccgttgctgaagcgtccaacttagctttgaaggcagaatta |
30048605 |
T |
|
| Q |
110 |
atagagaa |
117 |
Q |
| |
|
|||||||| |
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|
| T |
30048606 |
atagagaa |
30048613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 30050793 - 30050900
Alignment:
| Q |
10 |
ttatactaatggtttgaaaggttcgttgtgagagaagatgggattgcagaccgtttggaccgtttttgaagcgtccaacctaactatgaaggtagaacta |
109 |
Q |
| |
|
||||| || |||||||||| |||| ||| ||||||||||||||| ||||| |||||||||||| ||||||||||||| || || |||||| |||| || |
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| T |
30050793 |
ttatattagtggtttgaaaagttcattgcaagagaagatgggattacagactgtttggaccgttgctgaagcgtccaacttagctttgaaggcagaatta |
30050892 |
T |
|
| Q |
110 |
atagagaa |
117 |
Q |
| |
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|||||||| |
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|
| T |
30050893 |
atagagaa |
30050900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 10 - 273
Target Start/End: Complemental strand, 22925866 - 22925595
Alignment:
| Q |
10 |
ttatactaatggtttgaaaggttcgttgtgagagaagatgggattgcagaccgtttggaccgtttttgaagcgtccaacctaactatgaaggtagaacta |
109 |
Q |
| |
|
||||| ||||||||||||| |||| ||| ||||||||||||||| ||||| |||||||||||| |||||||||||||||| || | |||| ||| || |
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| T |
22925866 |
ttatattaatggtttgaaaagttcattgcaagagaagatgggattacagactgtttggaccgttgctgaagcgtccaacctatctttaaaggcggaatta |
22925767 |
T |
|
| Q |
110 |
atagagaaatctcccatagatttctcaaatttcgaaaggtattctccacataacaatactgatgacaaagagaagagtgcatc--------attcaaatc |
201 |
Q |
| |
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||| ||||||| || | | |||||||||||||| ||| ||||||||||| ||| | |||||||||||||||| |||||| | ||||||| | |
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| T |
22925766 |
atatagaaatcccctagaaatttctcaaatttcagaagatattctccacagaaccaagctgatgacaaagagaaaagtgcaccagtcaaagattcaaacc |
22925667 |
T |
|
| Q |
202 |
atgttagcaaagcaagcagttctagcagtgcaccgcaacacaaggtccctgtccaaaaacaaaacaacccat |
273 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||| | | |||| ||| |||||||| || |||||||||| |
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|
| T |
22925666 |
atgttagcaaagcaagcagttctggcagtgtacctccagtcaagtcccccgtccaaaagcagaacaacccat |
22925595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 2156836 - 2157027
Alignment:
| Q |
9 |
attatactaatggtttgaaaggttcgttgtgagagaagatgggattgcagaccgtttggaccgtttttgaagcgtccaacctaactatgaa-ggtagaac |
107 |
Q |
| |
|
|||||| || |||||||||| |||| ||| ||||||||||||||| | ||| ||||||||||| ||||||||| ||||| || | || || ||| |
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| T |
2156836 |
attatattagtggtttgaaaagttcattgcaagagaagatgggattaccgactatttggaccgttgctgaagcgtcacacctagctttcaaaggcggaat |
2156935 |
T |
|
| Q |
108 |
taatagagaaatctcccatagatttctcaaatttcgaaaggtattctccacataacaatactgatgacaaagagaagagtgcatcattcaaa |
199 |
Q |
| |
|
|||| |||||||| | || | |||||||||||||| ||| ||||||||||| ||| | |||||||||||||||| |||||| || ||||| |
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| T |
2156936 |
taatcgagaaatccctcagaaatttctcaaatttcagaagatattctccacagaaccaagctgatgacaaagagaaaagtgcagcaatcaaa |
2157027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 32163021 - 32162940
Alignment:
| Q |
19 |
tggtttgaaaggttcgttgtgagagaagatgggattgcagaccgtttggaccgtttttgaagcgtccaacctaactatgaag |
100 |
Q |
| |
|
|||||||||||| || ||| ||| |||||||||||||| || |||||||||||| ||||| |||||||||| || ||||| |
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|
| T |
32163021 |
tggtttgaaaggatccttgcaagaaaagatgggattgcaaactgtttggaccgttgctgaagtgtccaacctagctttgaag |
32162940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 8219020 - 8219089
Alignment:
| Q |
19 |
tggtttgaaaggttcgttgtgagagaagatgggattgcagaccgtttggaccgtttttgaagcgtccaac |
88 |
Q |
| |
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|||||||||||| || ||| || ||||| ||||||||| || |||||||||||| ||||||||||||| |
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|
| T |
8219020 |
tggtttgaaaggatccttgcaagggaagaggggattgcaaactgtttggaccgttgctgaagcgtccaac |
8219089 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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