View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_low_27 (Length: 327)
Name: NF20146_low_27
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 2635489 - 2635746
Alignment:
| Q |
18 |
acaagaaggagctagtaattagtttggaattggcttgctaatccaccctttcctatatataaatcacacctccccaacttcaattgtagtgtatcaagag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2635489 |
acaagaaggagctagtaattagtttggaattggcttgctattccaccctttcctatatataaatcacacctccccaacttcaattgtagtgtatcaagag |
2635588 |
T |
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| Q |
118 |
gagttcaataaaattttgaattctgtttcaatgtctgctgatagtgatatctatactattgatatttctttccacacacattcaagttcaaacatagtct |
217 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2635589 |
gagttcaacaaaattttgaattctgtttcaatgtctgctgatagtgatatctatactattgatatttctttccacacacattcaagttcaaacatagtct |
2635688 |
T |
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| Q |
218 |
cttatgatcctaattaccctttcaattatattgaaacagttcaagaggatttgaacaa |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2635689 |
cttatgatcctaattaccctttcaattatattgaaacagttcaagaggatttgaacaa |
2635746 |
T |
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