View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_low_28 (Length: 321)
Name: NF20146_low_28
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 32 - 306
Target Start/End: Original strand, 36596876 - 36597150
Alignment:
| Q |
32 |
taattaattaatggagtacgaatttggtttgaatgtgaatctagaactagaagcttgactttgtccattcatgcaatagaagtaagtaggtggctactca |
131 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36596876 |
taattaattaatgtagtacgaatttggtttgaatgtgaatctagaactagaagcttgactttgtccattcatgcaatagaagtaagtaggtggctactca |
36596975 |
T |
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| Q |
132 |
cgaatttattcatggtttttcacggtgagtcatcttcagctttacacgtaaggagtgcaaagaaaagtacatatttcatgtataatatatgcacgacaaa |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36596976 |
cgaatttattcatggtttttcacggtgagtcatcttcaactttacacgtaaggagtgcaaagaaaagtacatatttcatgtataatatatgcacaacaaa |
36597075 |
T |
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| Q |
232 |
ttattcagttattatttaaacattctattctaccnnnnnnntaaataataaacattcttcttttctcttgatgat |
306 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36597076 |
ttattcagttattatttaaacattctattctaccaaaaaaataaataataaacattcttcttttctcttgatgat |
36597150 |
T |
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