View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_low_30 (Length: 311)
Name: NF20146_low_30
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 121 - 297
Target Start/End: Original strand, 1457252 - 1457428
Alignment:
| Q |
121 |
cttcaattttcctactaacatttctaacaaaaaattactaatatttttcattagnnnnnnnnntacctcagctgcattttttaccctagccatggaagta |
220 |
Q |
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| T |
1457252 |
cttcaattttcctactaacatttcaaacaaaaaattactaatatttttcattagaaaaaaaaatacctcagctgcattttttaccctagccatggaagta |
1457351 |
T |
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| Q |
221 |
tcagctctagcattaataaatctccattgcaaaagtctgttatgcaaaatcttgaacttatgatacacttcttcttg |
297 |
Q |
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| T |
1457352 |
tcagctctagcattaataaatctccattgcaaaagtctgttatgcaaaatcttgaacttatgatacacttcttcttg |
1457428 |
T |
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Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 1457174 - 1457264
Alignment:
| Q |
11 |
aatgttcatgaaacatagtgataaagtgaattgagggtttaaaaagagaaatataagggtggaagaaataattagttatacttcaattttcct |
103 |
Q |
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| T |
1457174 |
aatgttcatgaaacatagtgataaagcgaattgagggtttaaaaagagaaatataagggtggaagaaataat--attatacttcaattttcct |
1457264 |
T |
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