View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_low_31 (Length: 298)
Name: NF20146_low_31
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 15920870 - 15921159
Alignment:
| Q |
1 |
aatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaatgcccggatgccctaaaccttaagtttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15920870 |
aatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaatgcccggatgccctaaaccttaagtttg |
15920969 |
T |
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| Q |
101 |
atcaactgatgcacatatggagagatactttattgttggagaatcaacttccaagaataatgcttgagattctatgcgaagaagcgggttttgatttggg |
200 |
Q |
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| ||||||||||||||||||||||||||| ||||| ||||| || ||||||| | ||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
15920970 |
accaactgatgcacatatggagagatactaatttgttagagaaccagcttccaaacaaaatgcttgagattctatgcaaagaagcgggttatgatttggg |
15921069 |
T |
|
| Q |
201 |
atttttaattaacaattatgatagtttgggtgaatataaacgagaaggaatggaagtggttcaattggaaaatcctaagccctttcatct |
290 |
Q |
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| T |
15921070 |
atttttaattaacaattatgataatttgggtcgaggtaaacgatgcggaatggtaatggttcaattggaaaatactaagccctgtcatct |
15921159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 15874227 - 15873939
Alignment:
| Q |
1 |
aatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaatgcccggatgccctaaaccttaagtttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15874227 |
aatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatgggaaatgttgatgaccaatgcccgaatgccctaaaccttaagtttg |
15874128 |
T |
|
| Q |
101 |
atcaactgatgcacatatggagagatactttattgttggagaatcaactt-ccaagaataatgcttgagattctatgcgaagaagcgggttttgatttgg |
199 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
15874127 |
accaactgatgcacatatggagagatactttattgttggagaatcaacttcccaagaataatgcttgagattctatgcgaagaaatgggtattgatttgg |
15874028 |
T |
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| Q |
200 |
gatttttaattaacaattatgatagtttgggtgaatataaacgagaaggaatggaagtggttcaattggaaaatcctaagccctttcat |
288 |
Q |
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| T |
15874027 |
aatttttaattaacaattcttttgatatgggtgaatccaaacgacttggaatggtaatagtcaaattggaaaatcctaagccctttcat |
15873939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 15899842 - 15900058
Alignment:
| Q |
1 |
aatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaatgcccggatgccctaaaccttaagtttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15899842 |
aatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaatgcccggatgccctaaaccttaagtttg |
15899941 |
T |
|
| Q |
101 |
atcaactgatgcacatatggagagatactttattgttggagaatcaacttccaagaataatgcttgagattctatgcgaagaagcgggttttgatttggg |
200 |
Q |
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| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| || || ||||||||| |
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| T |
15899942 |
accaactgatgcacatatggagagatacttttttgttggagaatcaacttccaaaaataatgcttgagattctatgcgaagaaacgagtgttgatttgga |
15900041 |
T |
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| Q |
201 |
atttttaattaacaatt |
217 |
Q |
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|||||||||||||||| |
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| T |
15900042 |
ttttttaattaacaatt |
15900058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 14049268 - 14049119
Alignment:
| Q |
4 |
gatcttgcttggatattgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaatgcccggatgccctaaaccttaagtttgatc |
103 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| ||||| || |||||||||||||| |||||||||| || || | ||||| ||||||||||||| |
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| T |
14049268 |
gatcttgcttggatattgttcgtggatggatgttccttgctgcattttatggaaaatgtcgatgaccaatatcctgaagggctaaatcttaagtttgatc |
14049169 |
T |
|
| Q |
104 |
aactgatgcacatatggagagatactttattgttggagaatcaacttcca |
153 |
Q |
| |
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|| ||||| |||||||||||||| | ||||||||||| ||||||||| |
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| T |
14049168 |
aattgatgtacatatggagagatgttaagttgttggagaaccaacttcca |
14049119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 14060642 - 14060490
Alignment:
| Q |
1 |
aatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaatgcccggatgccctaaaccttaagtttg |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||| || |||| |||||| |||||||||| || || | ||||| |||||||||| |
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| T |
14060642 |
aatgatcttgcttggatattgttcgtggatggatgttccttgctacatttcatgggaaatgtcgatgaccaatatcccgaagggctaaatcttaagtttg |
14060543 |
T |
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| Q |
101 |
atcaactgatgcacatatggagagatactttattgttggagaatcaacttcca |
153 |
Q |
| |
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| ||| ||||| | |||||||||||| || ||||| ||||| ||||||||| |
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| T |
14060542 |
accaattgatgtatatatggagagatgtttcgttgttagagaaccaacttcca |
14060490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 21785704 - 21785738
Alignment:
| Q |
13 |
tggatattgtttgtggatggatgttctttgctaca |
47 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
21785704 |
tggatgttgtttgtggatggatgttctttgctaca |
21785738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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