View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_low_33 (Length: 296)
Name: NF20146_low_33
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 10033200 - 10033478
Alignment:
| Q |
18 |
taacttcaacctagaatatcaaagtatttcagaatttgaactagtgggttttagaaatgaatttatttgacaatatggtttgtgaatgaggaaattacac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10033200 |
taacttcaacctagaatatcaaagtatttcagaatttgaactagtgggttttagaaatgaatttatttgacaatatggtttgtgaatgaggaaattacac |
10033299 |
T |
|
| Q |
118 |
cccctccccggagagattataatattacactccc-----ctcttatgattaactatacaacttagtccatttaacttaacactgttaaagaagnnnnnnn |
212 |
Q |
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|||||||| ||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10033300 |
cccctccctggagagattatgatattacactcccctcctctcttatgattaattatacaacttagtccatttaacttaacactgttaaagaagttttctt |
10033399 |
T |
|
| Q |
213 |
nnnnnnnntattatttaataagtttagattgacaataatatccnnnnnnnaagtctaatattttactcttcatctcact |
291 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
10033400 |
aaaaaaaatattatttaataagtttagattgacaataatatcctttttttaagtctaatattttactcttcatttcact |
10033478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 10055112 - 10055390
Alignment:
| Q |
18 |
taacttcaacctagaatatcaaagtatttcagaatttgaactagtgggttttagaaatgaatttatttgacaatatggtttgtgaatgaggaaattacac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10055112 |
taacttcaacctagaatatcaaagtatttcagaatttgaactagtgggttttagaaatgaatttatttgacaatatggtttgtgaatgaggaaattacac |
10055211 |
T |
|
| Q |
118 |
cccctccccggagagattataatattacactccc-----ctcttatgattaactatacaacttagtccatttaacttaacactgttaaagaagnnnnnnn |
212 |
Q |
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|||||||| ||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10055212 |
cccctccctggagagattatgatattacactcccctcctctcttatgattaattatacaacttagtccatttaacttaacactgttaaagaagttttctt |
10055311 |
T |
|
| Q |
213 |
nnnnnnnntattatttaataagtttagattgacaataatatccnnnnnnnaagtctaatattttactcttcatctcact |
291 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
10055312 |
aaaaaaaatattatttaataagtttagattgacaataatatcctttttttaagtctaatattttactcttcatttcact |
10055390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 109 - 205
Target Start/End: Original strand, 54257994 - 54258096
Alignment:
| Q |
109 |
aaattacaccccc-tccccggagagattataatattacactcccctc-----ttatgattaactatacaacttagtccatttaacttaacactgttaaag |
202 |
Q |
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|
||||||||||||| ||||| |||||||||| |||||||||||||||| ||| |||||| |||||||||||||||||||||||| |||| ||||||| |
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| T |
54257994 |
aaattacacccccgtcccctgagagattatgatattacactcccctcctctcttaagattaaatatacaacttagtccatttaacttgacaccgttaaag |
54258093 |
T |
|
| Q |
203 |
aag |
205 |
Q |
| |
|
||| |
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|
| T |
54258094 |
aag |
54258096 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 104 - 205
Target Start/End: Original strand, 2557645 - 2557750
Alignment:
| Q |
104 |
tgaggaaattacaccccctccccggagagattataatattacactcccctct-----tatgattaactatacaacttagtccatttaacttaacactgtt |
198 |
Q |
| |
|
|||| |||||||||||| ||||| |||||||||| ||||||||||||||||| || |||||| ||||||| |||||||||||||||| |||| ||| |
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| T |
2557645 |
tgagtaaattacacccc-tcccctgagagattatgatattacactcccctctccttttaagattaaatatacaatttagtccatttaacttgacaccgtt |
2557743 |
T |
|
| Q |
199 |
aaagaag |
205 |
Q |
| |
|
||||||| |
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|
| T |
2557744 |
aaagaag |
2557750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 11204847 - 11204927
Alignment:
| Q |
109 |
aaattacaccccctccccggagagattataatattaca-----ctcccctcttatgattaactatacaacttagtccattt |
184 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||| |||||||||||||||||| ||||||||||| ||||||| |
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| T |
11204847 |
aaattacaccccctcccatgagagattatgatattacattttcctcccctcttatgattaaatatacaacttaatccattt |
11204927 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 285
Target Start/End: Original strand, 11205021 - 11205085
Alignment:
| Q |
221 |
tattatttaataagtttagattgacaataatatccnnnnnnnaagtctaatattttactcttcat |
285 |
Q |
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|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
11205021 |
tattatttaataagtttaaattgacaataatatcctttctttcagtctaatattttactcttcat |
11205085 |
T |
|
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