View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_low_36 (Length: 272)
Name: NF20146_low_36
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 44471541 - 44471787
Alignment:
| Q |
18 |
aattactgtttgtttttaccagctaataactgttttaatacggaagaaaaactaagaaataaacaaatctctttaaaaaaga---tgaataatcaagtta |
114 |
Q |
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| T |
44471541 |
aattactgtttgtttttaccagctaataactgttttaatacggaagaaaaactaagaaataaacaaatttctttaaaaaatatattgaatgatcaagtta |
44471640 |
T |
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| Q |
115 |
cannnnnnnatgagatttacattagtctcttacactgtccac-nnnnnnnnnncttagtctattacactacatatatatagagactaattttagttaatt |
213 |
Q |
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| T |
44471641 |
catttttttatgagatttacattagtctcttacactgtccacaaaaaaaaaaacttagtctcttacactac----atatagagactaattttagttaatt |
44471736 |
T |
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| Q |
214 |
gcatagaactataatattttaatataacaaattctagtatctcttcttctc |
264 |
Q |
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| T |
44471737 |
gcatagaactataatattttaatataacaaattctagtatctcttcttctc |
44471787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 44476305 - 44476363
Alignment:
| Q |
197 |
actaattttagttaattgcatagaactataata-ttttaatataacaaattctagtatc |
254 |
Q |
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| T |
44476305 |
actaattttagttaattgcatagaactagaatatttttaatataacaaattttagtatc |
44476363 |
T |
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