View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_low_39 (Length: 254)
Name: NF20146_low_39
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 2855785 - 2855551
Alignment:
| Q |
1 |
tcaacttcattcctcttaatctctccactttctccacttacattcgagtctctactaacgttcaattcagtttctgataactgcttttctccctttacgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
2855785 |
tcaacttcattcctcttaatctctccactttctccgcttacattcgagtctctactaacgttcaattcagtttctgataactgcttttttccctttactt |
2855686 |
T |
|
| Q |
101 |
ctaagtcaccggaacgaagttggcagagaaggaaaaaccagaaactcgagaagaacttatgtattctaatgaagaacattgaatacatgaaaaaatctat |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2855685 |
ctaagtcaccggaacgaagttggcagaaaaggaaaaaccagaaactcgagaagaacttatgtattctaatgaagaacattgaatacatgaaaaaatctat |
2855586 |
T |
|
| Q |
201 |
taaaccaaacaaagttgagttgctttcatcattct |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
2855585 |
caaaccaaacaaagttgagttgctttcatcattct |
2855551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 218
Target Start/End: Complemental strand, 2851654 - 2851506
Alignment:
| Q |
70 |
gtttctgataactgcttttctccctttacgtctaagtcaccggaacgaagttggcagagaaggaaaaaccagaaactcgagaagaacttatgtattctaa |
169 |
Q |
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|||||||||| ||| | |||||| ||||||||||| |||| ||||||| | ||| |||||||||||| ||| |||||||||||||||| ||||||| |
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| T |
2851654 |
gtttctgatatttgcatctctcccattacgtctaaggcaccaaaacgaagatagcaaagaaggaaaaactgaaaattcgagaagaacttatggattctaa |
2851555 |
T |
|
| Q |
170 |
tgaagaacattgaatacatgaaaaaatctattaaaccaaacaaagttga |
218 |
Q |
| |
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|||| || | ||||| |||||||| ||||||||||||||||||||||| |
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| T |
2851554 |
tgaataatgtagaatatatgaaaaagtctattaaaccaaacaaagttga |
2851506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 65 - 218
Target Start/End: Complemental strand, 10477658 - 10477505
Alignment:
| Q |
65 |
attcagtttctgataactgcttttctccctttacgtctaagtcaccggaacgaagttggcagagaaggaaaaaccagaaactcgagaagaacttatgtat |
164 |
Q |
| |
|
||||||||||| ||| |||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||| ||| | || || ||||| ||||| |
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| T |
10477658 |
attcagtttctaatacctgcttctctccctttacttcgtagtcaccggaacgaagttggcagagaaggaaaaaccaaaaagttgaaaaaaacttttgtat |
10477559 |
T |
|
| Q |
165 |
tctaatgaagaacattgaatacatgaaaaaatctattaaaccaaacaaagttga |
218 |
Q |
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||| ||||| || ||||||| |||||||||||||| |||||||| |||||||| |
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| T |
10477558 |
tctgatgaataatgttgaatatatgaaaaaatctatcaaaccaaaaaaagttga |
10477505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 8216074 - 8216042
Alignment:
| Q |
1 |
tcaacttcattcctcttaatctctccactttct |
33 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
8216074 |
tcaacttcattcctcttaatctctccactttct |
8216042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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