View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_low_40 (Length: 252)
Name: NF20146_low_40
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 57 - 229
Target Start/End: Complemental strand, 2508759 - 2508587
Alignment:
| Q |
57 |
cgcacatacaacaagttaatacactgtaaaaataacacaagttattataaaaattcaaatttcgtactccataacaaacttgttat-aaannnnnnnnng |
155 |
Q |
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| T |
2508759 |
cgcacatacaacaagttaatacactgtaaaaa-aacacaagttattataaaaattcaaatttcgtactccataacaaacttgttataaaaaaaaaatctg |
2508661 |
T |
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| Q |
156 |
aataaaacaagaaagaatatagtaagtagataaggtcctagttccttcttaaacattgactatttttctaaaga |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2508660 |
aataaaacaagaaagaatatagtaagtagataaggtcctagttccttcttaaacattgactatttttctaaaga |
2508587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 2510844 - 2510773
Alignment:
| Q |
67 |
acaagttaatacactgtaaaaataacacaagttattataaaaattcaaatttcgtactccataacaaacttgt |
139 |
Q |
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| T |
2510844 |
acaagttaatattctgtaaaaa-aacacaagttaatataaaaattcaaatttaatactccataacaaacttgt |
2510773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 2510755 - 2510706
Alignment:
| Q |
157 |
ataaaacaagaaagaa-tatagtaagtagataaggtcctagttccttctt |
205 |
Q |
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||||||||||||| || ||||||||||||||||||| |||||||||||| |
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| T |
2510755 |
ataaaacaagaaaaaaatatagtaagtagataaggttgtagttccttctt |
2510706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 57 - 229
Target Start/End: Original strand, 27136877 - 27137049
Alignment:
| Q |
57 |
cgcacatacaacaagttaatacactgtaaaaataacacaagttattataaaaattcaaatttcgtactccataacaaacttgttat-aaannnnnnnnng |
155 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
27136877 |
cgcacatacaacaagttaatacactgtaaaaa-aacacaagttattataaaaattcaaatttcgtactccataacaaacttgttataaaaaaaaaatctg |
27136975 |
T |
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| Q |
156 |
aataaaacaagaaagaatatagtaagtagataaggtcctagttccttcttaaacattgactatttttctaaaga |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27136976 |
aataaaacaagaaagaatatagtaagtagataaggtcctagttccttcttaaacattgactatttttctaaaga |
27137049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 42821906 - 42821853
Alignment:
| Q |
88 |
ataacacaagttattataaaaattcaaatttcgtactccataacaaacttgtta |
141 |
Q |
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|||||| |||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
42821906 |
ataacaaaagttaacataaaaattcaaattttatactccataacaaacttgtta |
42821853 |
T |
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