View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_low_41 (Length: 249)
Name: NF20146_low_41
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_low_41 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 30768311 - 30768082
Alignment:
| Q |
19 |
ccttgaaatcgacggactcattaataagtacttgtattgtatatcccatttttgactcgagaatttgtctcatagaggattcaaatggcataagccatga |
118 |
Q |
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| T |
30768311 |
ccttgaaatcgacggactcattaataagtacttgtattgtatatcccacttttgactcgagaatttgtctcatagaggattcaaatggcataagccatga |
30768212 |
T |
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| Q |
119 |
ggatacattgataatacattcaactaaactccctaaaacttnnnnnnnncacctttacatatttcgtattttgaactcctaagttttatttttccacctc |
218 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30768211 |
ggatacattgatgatacattcaactaaactccctaaaactt-aaaaaaacacctttacatatttcgtattttgaactcctaagttttatttttccacctc |
30768113 |
T |
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| Q |
219 |
tagtccaaaacgtccaagaactcaaaagttt |
249 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
30768112 |
tagtccaaaacgtccaagaactcaaaagttt |
30768082 |
T |
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